View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9817_low_9 (Length: 357)
Name: NF9817_low_9
Description: NF9817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9817_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 239156 - 239341
Alignment:
| Q |
18 |
agaaatcgacagagggttttcagtcactaccttacctagtagctttgttcagctccatgctttggttgtactatgcattgctcaaaaaagatgcttttct |
117 |
Q |
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| T |
239156 |
agaaatcgacagagggttttcagtcactaccttacctagtagctttgttcagctccatgctttggttgtactatgcattgctcaaaaaagatgcttttct |
239255 |
T |
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| Q |
118 |
cctcattaccataaactcatttggatgtgtggtagagaccatctacatcatattgtacatcatatatgcaccaagggatgcaaggg |
203 |
Q |
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| T |
239256 |
cctcattaccataaactcatttggatgtgtggtagagaccatctacatcatattgtacatcatctatgcaccaagggatgcaaggg |
239341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 20 - 203
Target Start/End: Original strand, 225141 - 225324
Alignment:
| Q |
20 |
aaatcgacagagggttttcagtcactaccttacctagtagctttgttcagctccatgctttggttgtactatgcattgctcaaaaaagatgcttttctcc |
119 |
Q |
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| T |
225141 |
aaatcaacagagggttttcagtcactaccttatctagtggcactattcagttccatgctgtggttgtattatgcattcctcaaaaaagatgaatttctcc |
225240 |
T |
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| Q |
120 |
tcattaccataaactcatttggatgtgtggtagagaccatctacatcatattgtacatcatatatgc-accaagggatgcaaggg |
203 |
Q |
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| T |
225241 |
ttattaccattaactcttttgggtgcgtcgtagagctcatttacatcatcttgtacataatctatgcgaccaa-ggatgcaaggg |
225324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 239432 - 239484
Alignment:
| Q |
293 |
gtagaacttaactttcaagttactttcggcaatgaatgtggggtcctttgctt |
345 |
Q |
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| T |
239432 |
gtagaacttaactttcaagttactttcggcaatgaatgtggggtcctttgctt |
239484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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