View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9818_1 (Length: 517)
Name: NF9818_1
Description: NF9818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9818_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 271 - 494
Target Start/End: Complemental strand, 34164501 - 34164279
Alignment:
| Q |
271 |
tacacacactatggtcttatgctagaacctatcatcaagcaaaatatatgaaacttaagctaataattcaaatttccaacaacaacaaaaagtgaaactt |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
34164501 |
tacacacactatggtcttatgctagaacctatcatcaagcaaaatatatgaaacttaagctaataattcaaatttcaaacaacaa-aaaaagtgaaactt |
34164403 |
T |
|
| Q |
371 |
acgagtgaggaaataagaaacggcgaaaatagagagagcccaccaaagagtgcggagcttaaactcttggatcagatcattcacactctccatgggtttc |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34164402 |
acgagtgaggaaataagaaacggcgaaaatagagagagcccaccaaagagtgcggagcttaaactcttggatcagatcattcacactctccatgggtttc |
34164303 |
T |
|
| Q |
471 |
ttcttcatcgtcgaatcaaacaac |
494 |
Q |
| |
|
||||||||||| |||||||||||| |
|
|
| T |
34164302 |
ttcttcatcgttgaatcaaacaac |
34164279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 34164753 - 34164546
Alignment:
| Q |
12 |
agagagacgcggatcattcaaagacaactgttttttctccaaatgtgataaatatgtatgtgatctaggttgtttaaccttccaacgaaattccacatta |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34164753 |
agagagacgcggatcattcaaagacaactgttttttctccaaatgtgataaatatgtatgtgatctaggttgtttaaccttccaacgaaattccacatta |
34164654 |
T |
|
| Q |
112 |
tttacaataatgcgcagagcacaaacaaatagaattgacatcggcacattcatccacatcgatttacttgtatctgtgacagataatcaacacatggaac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34164653 |
tttacaataatgcgcagagcacaaacaaatagaattgacatcggcacattcatccacatcgatttacttgtatctgtgacagataatcaacacatggaac |
34164554 |
T |
|
| Q |
212 |
atgaatac |
219 |
Q |
| |
|
|||||||| |
|
|
| T |
34164553 |
atgaatac |
34164546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 186
Target Start/End: Complemental strand, 12406543 - 12406393
Alignment:
| Q |
36 |
caactgttttttctccaaatgtgataaatatgtatgtgatctaggttgtttaaccttccaacgaaattccacattatttacaataatgcgcagagcacaa |
135 |
Q |
| |
|
|||||| |||||||||||||| |||| || || ||| |||||||| | | ||||||||| ||||| ||||| || || |||| ||| |||| || | |
|
|
| T |
12406543 |
caactgctttttctccaaatgagataggtaagtttgtaatctaggtggctgaaccttccagcgaaactccactttgttcacaagaatcttcagaccagta |
12406444 |
T |
|
| Q |
136 |
acaaatagaattgacatcggcacattcatccacatcgatttacttgtatct |
186 |
Q |
| |
|
| ||| ||||| ||||| || | |||||||||||| ||||||||||||||| |
|
|
| T |
12406443 |
aaaaaaagaatggacattggtatattcatccacattgatttacttgtatct |
12406393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University