View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9818_low_1 (Length: 740)
Name: NF9818_low_1
Description: NF9818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9818_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 34164994 - 34164546
Alignment:
| Q |
1 |
aagcaacataccttgtcaacaagtcgacaagatttatctctttaacccttgctgatatttcagcaagaacatccatgattatagcgcgtatctgatcagg |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34164994 |
aagcagcataccttgtcaacaagtcgacaagatttatctctttaacccttgctgatatttcagcaagaacatccatgattatagcgcgtatctgatcagg |
34164895 |
T |
|
| Q |
101 |
aaactccctatccggagtaatctccgagtaccacaaatcaaccacgaaatccttcaaaatcttatcaatgaaatcagccattgcatcctccacaacagga |
200 |
Q |
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| T |
34164894 |
aaactccctatccggagtaatctccgagtaccacaaatcaaccacgaaatccttcaaaatcttatcaatgaaatcagccattgcatcctccacaacagga |
34164795 |
T |
|
| Q |
201 |
gaatcaattttcctcttccactttaccgggggaggtgcactagagagacgcggatcattcaaagacaactgttttttctccaaatgtgataaatatgtat |
300 |
Q |
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| T |
34164794 |
gaatcaattttcctcttccactttaccgggggaggtacactagagagacgcggatcattcaaagacaactgttttttctccaaatgtgataaatatgtat |
34164695 |
T |
|
| Q |
301 |
gtgatctaggttgtttaaccttccaacgaaattccacattatttacaataatgcgcagagcacaaacaaatagaattgacatcggcacattcatccacat |
400 |
Q |
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| T |
34164694 |
gtgatctaggttgtttaaccttccaacgaaattccacattatttacaataatgcgcagagcacaaacaaatagaattgacatcggcacattcatccacat |
34164595 |
T |
|
| Q |
401 |
cgatttacttgtatctgtgacagataatcaacacatggaacatgaatac |
449 |
Q |
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| T |
34164594 |
cgatttacttgtatctgtgacagataatcaacacatggaacatgaatac |
34164546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 501 - 724
Target Start/End: Complemental strand, 34164501 - 34164279
Alignment:
| Q |
501 |
tacacacactatggtcttatgctagaacctatcatcaagcaaaatatatgaaacttaagctaataattcaaatttccaacaacaacaaaaagtgaaactt |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
34164501 |
tacacacactatggtcttatgctagaacctatcatcaagcaaaatatatgaaacttaagctaataattcaaatttcaaacaacaa-aaaaagtgaaactt |
34164403 |
T |
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| Q |
601 |
acgagtgaggaaataagaaacggcgaaaatagagagagcccaccaaagagtgcggagcttaaactcttggatcagatcattcacactctccatgggtttc |
700 |
Q |
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| T |
34164402 |
acgagtgaggaaataagaaacggcgaaaatagagagagcccaccaaagagtgcggagcttaaactcttggatcagatcattcacactctccatgggtttc |
34164303 |
T |
|
| Q |
701 |
ttcttcatcgtcgaatcaaacaac |
724 |
Q |
| |
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| T |
34164302 |
ttcttcatcgttgaatcaaacaac |
34164279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 20 - 416
Target Start/End: Complemental strand, 12406789 - 12406393
Alignment:
| Q |
20 |
caagtcgacaagatttatctctttaacccttgctgatatttcagcaagaacatccatgattatagcgcgtatctgatcaggaaactccctatccggagta |
119 |
Q |
| |
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|||||| |||| ||||||||||||||||| | || | |||||||||| | |||||||||| | ||||| || ||||||||||||| ||| ||||| |
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| T |
12406789 |
caagtcaacaatgtttatctctttaaccctcaccgagacttcagcaagagcgtccatgattaagtcacgtatttgctcaggaaactccccatcttgagta |
12406690 |
T |
|
| Q |
120 |
atctccgagtaccacaaatcaaccacgaaatccttcaaaatcttatcaatgaaatcagccattgcatcctccacaacaggagaatcaattttcctcttcc |
219 |
Q |
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|| || | ||||||| || | ||||||||||||||| ||| ||| |||||||| || ||| ||||||| |||||||||||||||||| |||||| |
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| T |
12406689 |
atgtctgcataccacatatttatcacgaaatccttcaatatcaaatcgatgaaatcgttcaaagcagcctccaccacaggagaatcaattttcttcttcc |
12406590 |
T |
|
| Q |
220 |
actttaccgggggaggtgcactagagagacgcggatcattcaaagacaactgttttttctccaaatgtgataaatatgtatgtgatctaggttgtttaac |
319 |
Q |
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| || |||||||||| | ||||| | | |||| | | |||||| |||||||||||||| |||| || || ||| |||||||| | | ||| |
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| T |
12406589 |
atttgggagggggaggtgaagtagaggggtgttcttcatctagcggcaactgctttttctccaaatgagataggtaagtttgtaatctaggtggctgaac |
12406490 |
T |
|
| Q |
320 |
cttccaacgaaattccacattatttacaataatgcgcagagcacaaacaaatagaattgacatcggcacattcatccacatcgatttacttgtatct |
416 |
Q |
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|||||| ||||| ||||| || || |||| ||| |||| || || ||| ||||| ||||| || | |||||||||||| ||||||||||||||| |
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| T |
12406489 |
cttccagcgaaactccactttgttcacaagaatcttcagaccagtaaaaaaaagaatggacattggtatattcatccacattgatttacttgtatct |
12406393 |
T |
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