View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9819_high_5 (Length: 290)
Name: NF9819_high_5
Description: NF9819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9819_high_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 290
Target Start/End: Complemental strand, 38724086 - 38723812
Alignment:
| Q |
16 |
cattacgaacaaactccacaatctatgcatgcatataacaaaaacacaattaaaattcaatcagtatcatcttcaattcaattgtagaaacattgttttg |
115 |
Q |
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| T |
38724086 |
cattacgaacaaactccacaatctatgcatgcatataacaaaaacacaattaaaattcaatcagtatcatcttcaattcaattgtagaaacattgttttg |
38723987 |
T |
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| Q |
116 |
caagcaaggtttgaaaattgattaatacaagagaattaggaaactaaacctgtgttgctatgagagcaacggcttcagggtagttgagtttcaaaccacg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38723986 |
caagcaaggtttgaaaattgattaatacaagagaattaggaaactaaacctgtgttgctatgagagcaacggcttcagggtagttgagtttcaaaccacg |
38723887 |
T |
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| Q |
216 |
agcgagacgtttctgagcaagaaaaccagcattgtgcagctgtagtttttcaatttctctttgacacagtttcat |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38723886 |
agcgagacgtttctgagcaagaaaaccagcattgtgcagctgtagtttttcaatttctctttgacacagtttcat |
38723812 |
T |
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