View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9819_low_1 (Length: 629)
Name: NF9819_low_1
Description: NF9819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9819_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 486; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 8 - 548
Target Start/End: Complemental strand, 1830650 - 1830095
Alignment:
| Q |
8 |
gagtttggtgttgatcgtagagattgagaagaagagatttgaagacaaagatgcaagagcaaagttggggtggagttgtaatggaggagacactgatcta |
107 |
Q |
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| T |
1830650 |
gagtttggttttgatcgtagagattgagaagaagagatttgaagtcaaagatgcaagagcaaaggtggggtggagttgtaatggaggagacactgatcta |
1830551 |
T |
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| Q |
108 |
gttgaagaca---------------gaggcctaactacctagccataagattatgcgtatcatagaatcaacacataatgcaacagttatgtgtattcta |
192 |
Q |
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| T |
1830550 |
gttgaagacacgacccatgcaaacagaggcctaactacctagccataagattatgcgtatcatagaatcaacacataatgcaacagttatgtgtattcta |
1830451 |
T |
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| Q |
193 |
tttaaatactctcattggtatattaatgaacctaatatatggaccaaaattattatattagtgcaccaaaagctaaatattcttggactaacattcacaa |
292 |
Q |
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| T |
1830450 |
tttaaatactctcattggtatattaatgaacctaatatatggaccaaaattattatattagtgcaccaaaagctaaatattcttggactaacattcacaa |
1830351 |
T |
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| Q |
293 |
aggatcatgtgaatgaatcattaaaattgaattatgtgttggcagatggactgtacatttagaaaatttgaagatatagaaatcactaaccagtagcggc |
392 |
Q |
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| T |
1830350 |
aggatcatgtgaatgaatcattaaaattgaattatgtgttggcaaatggactgtacatttagaaaatttgaagatatagaaatcactaaccagtagcggc |
1830251 |
T |
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| Q |
393 |
aaacgataatcactcacttgctttcatagttgaatgcaccactgatacaaaagtttcaaatcaccttttagggacaaaagtttcaaacatgcagaacctc |
492 |
Q |
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| T |
1830250 |
aaactataatcactcacttgctttcatagttgaatgcaccactgatacaaaagtttcaaatcaccttttagggacaaaagtttcaaacatgcagaacctc |
1830151 |
T |
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| Q |
493 |
ctgcaaatgtaataggagaaaacacagcagaaccttggtaatcaagtcatggtgat |
548 |
Q |
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| T |
1830150 |
ctgcaaatgtaataggagaaaacacagcagaaccttggtaatcaagtcatggtgat |
1830095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 119 - 548
Target Start/End: Complemental strand, 1814899 - 1814446
Alignment:
| Q |
119 |
aggcctaactacctagccataagattatgcgtatcatagaatcaacacataatgcaacagttatgtgtattctatttaaatactctcattggtatattaa |
218 |
Q |
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| T |
1814899 |
aggcctaactacctagctataagattatgaatatcatagaatcaacacataatgcaacagttctatatattctatttgaatactctcatcggtctattga |
1814800 |
T |
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| Q |
219 |
tgaacctaatata-----------------tggaccaaaattattatattagtgcaccaaaagctaaatattcttggactaacattcacaaaggatcatg |
301 |
Q |
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| T |
1814799 |
tgaaccaaatatagtttagtctatcataaatggaccaaaattattatattagtaca------gttatatattcttggactaacattcacaatggatcatg |
1814706 |
T |
|
| Q |
302 |
tgaatgaatcattaaaattgaat-----ta------tgtgt--tggcagatggactgtacatttagaaaatttgaagatatagaaatcactaaccagtag |
388 |
Q |
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| T |
1814705 |
tgaatcaatcattaagattgcatatgtttaaagagctgtgtaatggtagatgcaatatacatttagaaaatttgaagatatagaaatcactaaccagtag |
1814606 |
T |
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| Q |
389 |
cggcaaacgataatcactcacttgctttcatagttgaatgcaccactgatacaaaagtttcaaatcaccttttagggacaaaagtttcaaacatgca-ga |
487 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||| ||||||||||||||||| || |
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| T |
1814605 |
cgtcaaacgataatcactcacttgctttcatagttgaatgcgccgctgatacaaaagtttcaaatcaccttttatggac-aaagtttcaaacatgcagga |
1814507 |
T |
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| Q |
488 |
acctcctgcaaatgtaataggagaaaacacagcagaaccttggtaatcaagtcatggtgat |
548 |
Q |
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| T |
1814506 |
acctcctgcaaatgtaatgggagaagacacatcagaaccttggtaatcaagtcatggtgat |
1814446 |
T |
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