View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9819_low_10 (Length: 267)
Name: NF9819_low_10
Description: NF9819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9819_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 52766902 - 52767153
Alignment:
| Q |
1 |
acgctataacagctataatagcaagaagcaagaatgtaggaccagtccctgcagcttctgcaatggaaagaaatgactgagccacaatcaaatttgaaat |
100 |
Q |
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| T |
52766902 |
acgctataacagctataatagcaagaagcaagaatgtaggaccagtccctgcagcttctgcaatggaaagaaatgactgagccacaatcaaatttgaaat |
52767001 |
T |
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| Q |
101 |
ccaattcacagtagctgacatgcctccacacattcctcggtactcctgcggatatacttcagagtttactgcccacggcacaggccccatccctggcgag |
200 |
Q |
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| T |
52767002 |
ccaattcacagtagctgacatccctccacacattcctcggtactcctgcggatatacttcagagtttactgcccacggcacaggccccatccctggcgag |
52767101 |
T |
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| Q |
201 |
aaaaatgcaatatatagggccaaaccaacaactgcaagccatccatacaaat |
252 |
Q |
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| T |
52767102 |
aaaaatgcaatatatagggccaaaccaacaaccgcaagccatccatacaaat |
52767153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 244
Target Start/End: Original strand, 52770885 - 52771109
Alignment:
| Q |
20 |
agcaagaagcaagaatgtaggaccagtccctgcagcttctgcaatggaaagaaatgactgagccacaatcaaatttgaaatccaattcacagtagctgac |
119 |
Q |
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| T |
52770885 |
agcaagaatcaagaaagtaggaccagtccctaaagcttcagcaacagaaagaaatgtctgagacacaatgagattggaaacccaacacacagtagctgac |
52770984 |
T |
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| Q |
120 |
atgcctccacacattcctcggtactcctgcggatatacttcagagtttactgcccacggcacaggccccatccctggcgagaaaaatgcaatatataggg |
219 |
Q |
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| T |
52770985 |
ataccaccacaaattcctctatattctttaggatatatctctgagttcattgcccacggcactggtcccatcccaggggagaaaaaagctatatacagta |
52771084 |
T |
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| Q |
220 |
ccaaaccaacaactgcaagccatcc |
244 |
Q |
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| T |
52771085 |
tcaaacccaaaactgcaagccatcc |
52771109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 249
Target Start/End: Complemental strand, 392857 - 392695
Alignment:
| Q |
87 |
atcaaatttgaaatccaattcacagtagctgacatgcctccacacattcctcggtactcctgcggatatacttcagagtttactgcccacggcacaggcc |
186 |
Q |
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|||||||||||||||||| ||| || |||| |||||| ||||| || ||||| || || | ||||||| || ||||||| | ||| || || |||| |
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| T |
392857 |
atcaaatttgaaatccaacacacggtcgctgccatgcccccacatatacctcgatattcttcaggatatatctctgagtttatagtccatggaactggcc |
392758 |
T |
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| Q |
187 |
ccatccctggcgagaaaaatgcaatatatagggccaaaccaacaactgcaagccatccataca |
249 |
Q |
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| T |
392757 |
ccattcctggcgagaagaaaccaatataaaggcctagcccgataactgcaagccatccataca |
392695 |
T |
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