View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9819_low_15 (Length: 217)
Name: NF9819_low_15
Description: NF9819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9819_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 8 - 200
Target Start/End: Original strand, 581320 - 581511
Alignment:
| Q |
8 |
gtttgtgacttcttactggtaatttgtttgctttgtaagagtcttatttggtatttctttttattattaatggttaggaaatatgtgattttggggaaga |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
581320 |
gtttgtgacttcttactggtaatttgtttgctttgtaagagtcttatttggtatttctttt-attattaatggttaggaaatatgtgattttggggaaga |
581418 |
T |
|
| Q |
108 |
gcttttgagttctgctgatgtgcccaagcgtttggcttttctccatgttgtgaaatttgaagaagttattggggaggatcttgagttatcttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
581419 |
gcttttgagttctgctgatgtgcccaagcgtttggcttttctccatgttgtgaaatttgaacaagttattggggaggatcttgagttatcttt |
581511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 97 - 195
Target Start/End: Original strand, 1207768 - 1207866
Alignment:
| Q |
97 |
tttggggaagagcttttgagttctgctgatgtgcccaagcgtttggcttttctccatgttgtgaaatttgaagaagttattggggaggatcttgagtta |
195 |
Q |
| |
|
|||| |||||||||||||| |||| ||| ||| ||| | ||||||||| ||||||||||||||||||||||||||||| ||| || |||| ||||||| |
|
|
| T |
1207768 |
tttgaggaagagcttttgaattcttctgttgttcccgaatgtttggcttctctccatgttgtgaaatttgaagaagttaatggagatgatcatgagtta |
1207866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 175
Target Start/End: Original strand, 1214960 - 1215107
Alignment:
| Q |
27 |
taatttgtttgctttgtaagagtcttatttggtatttctttttattattaatggttaggaaatatgtgattttggggaagagcttttgagttctgctgat |
126 |
Q |
| |
|
|||||| ||| |||| | |||||||||||||| ||| |||| || |||||| || ||| |||| | | |||| |||||| |||||||||||||| | |
|
|
| T |
1214960 |
taatttctttacttttttagagtcttatttggacttt-ttttgatgattaattgtcagggaatacctaaatttgaggaagaacttttgagttctgccgtg |
1215058 |
T |
|
| Q |
127 |
gtgcccaagcgtttggcttttctccatgttgtgaaatttgaagaagtta |
175 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1215059 |
gtgcccggtagtttggcttctctccatgttgtgaaatttgaagaagtta |
1215107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 1201639 - 1201712
Alignment:
| Q |
102 |
ggaagagcttttgagttctgctgatgtgcccaagcgtttggcttttctccatgttgtgaaatttgaagaagtta |
175 |
Q |
| |
|
|||||||| | | |||||||||| ||||||| | ||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
1201639 |
ggaagagcgtctaagttctgctgttgtgcccgaatgtttggcttctctccatgttgtgaaatttaaagaagtta |
1201712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 929300 - 929236
Alignment:
| Q |
115 |
agttctgctgatgtgcccaagcgtttggcttttctccatgttgtgaaatttgaagaagttattgg |
179 |
Q |
| |
|
||||| |||| ||||||| | ||||||||| |||| |||||||||||||| ||||||||||||| |
|
|
| T |
929300 |
agttcggctgttgtgcccgaatgtttggcttctctctatgttgtgaaatttaaagaagttattgg |
929236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 97 - 196
Target Start/End: Complemental strand, 8188591 - 8188492
Alignment:
| Q |
97 |
tttggggaagagcttttgagttctgctgatgtgcccaagcgtttggcttttctccatgttgtgaaatttgaagaagttattggggaggatcttgagttat |
196 |
Q |
| |
|
|||| |||||||||| |||||||||||| ||||||| | ||||||||| ||||||||||||||||||||||||| ||| | | || |||| |||||||| |
|
|
| T |
8188591 |
tttgtggaagagcttctgagttctgctgttgtgcccgattgtttggcttctctccatgttgtgaaatttgaagaaattaatagagacgatcatgagttat |
8188492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University