View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9819_low_2 (Length: 433)

Name: NF9819_low_2
Description: NF9819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9819_low_2
NF9819_low_2
[»] chr8 (9 HSPs)
chr8 (20-423)||(34743142-34743545)
chr8 (336-423)||(10773332-10773418)
chr8 (65-171)||(28009176-28009282)
chr8 (65-171)||(28066479-28066585)
chr8 (60-106)||(12503299-12503345)
chr8 (62-120)||(19923471-19923529)
chr8 (62-119)||(34743764-34743821)
chr8 (75-106)||(10206078-10206109)
chr8 (62-119)||(24628219-24628276)
[»] scaffold0260 (1 HSPs)
scaffold0260 (60-155)||(20500-20595)
[»] chr7 (4 HSPs)
chr7 (336-387)||(29707999-29708050)
chr7 (64-116)||(31268054-31268106)
chr7 (63-100)||(2169285-2169322)
chr7 (62-138)||(35720297-35720373)
[»] chr4 (4 HSPs)
chr4 (60-143)||(28999503-28999586)
chr4 (78-138)||(16585613-16585673)
chr4 (158-193)||(40312321-40312356)
chr4 (158-193)||(40322397-40322432)
[»] chr5 (3 HSPs)
chr5 (350-416)||(25760148-25760214)
chr5 (62-127)||(15238954-15239019)
chr5 (60-106)||(12066836-12066883)
[»] chr2 (7 HSPs)
chr2 (350-404)||(19984477-19984531)
chr2 (247-324)||(12965528-12965603)
chr2 (62-106)||(4783536-4783580)
chr2 (62-156)||(37828446-37828540)
chr2 (68-119)||(690333-690384)
chr2 (61-93)||(29667795-29667827)
chr2 (62-102)||(41358231-41358271)
[»] chr1 (5 HSPs)
chr1 (68-172)||(36816938-36817044)
chr1 (68-142)||(32306469-32306543)
chr1 (62-106)||(11788177-11788222)
chr1 (68-173)||(29861426-29861531)
chr1 (62-106)||(15474674-15474718)
[»] scaffold0085 (1 HSPs)
scaffold0085 (350-397)||(46897-46944)
[»] scaffold0005 (1 HSPs)
scaffold0005 (350-416)||(269467-269533)
[»] chr3 (2 HSPs)
chr3 (61-106)||(1885126-1885171)
chr3 (68-100)||(30259884-30259916)
[»] scaffold1107 (1 HSPs)
scaffold1107 (68-136)||(1460-1528)
[»] chr6 (1 HSPs)
chr6 (61-119)||(14710078-14710136)
[»] scaffold0067 (1 HSPs)
scaffold0067 (68-136)||(15522-15590)
[»] scaffold0018 (1 HSPs)
scaffold0018 (60-106)||(123331-123378)


Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 20 - 423
Target Start/End: Original strand, 34743142 - 34743545
Alignment:
Q  20 acgctcatattcccacaattgctaccggcaccgcacaacaaagaaaaatgctcttctcccaacaaaaaacgctccctcccaactgaactgtccaaaatac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34743142 acgctcatattcccacaattgctaccggcaccgcacaacaaagaaaaatgctcttctcccaacaaaaaatgctccctcccaactgaactgtccaaaatac 34743241  T
Q  120 tcccgcgttagttaactcatgcagatgtataacccaatgtaagttaactcacgcagcatgacttaagtcacgctggtgaaatacgactaacacacaaact 219  Q
    |||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |    
T  34743242 tcccgcgtgagttaactcatgcagatgtataacccaacgtgagttaactcacgcagcatgacttaagtcacgccggtgaaatacgactaacacacaaatt 34743341  T
Q  220 tctttctttaagtcgnnnnnnnnnnnnatgtttaatcaacacatagagtaagcagttggttttcctttattatcttactattgcccttaactatgaaaga 319  Q
    |||||||||||||||            ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||    
T  34743342 tctttctttaagtcgtttttattttttatgtttaatcaacacatagagtaagcagttgattttcctatattatcttactattgcccttaactatgataga 34743441  T
Q  320 aatcagtttagtaggtagtagtattataacattcatgcgatgaagagaaacaaacaaaaggaaattatagtgattgctgattattctgcgacatgatccc 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  34743442 aatcagtttagtaggtagtagtattataacattcatgcgatgaagagaaacaaacaaaaggaaattatagtgattgctgattattctgcaacatgatccc 34743541  T
Q  420 tttg 423  Q
    ||||    
T  34743542 tttg 34743545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 336 - 423
Target Start/End: Complemental strand, 10773418 - 10773332
Alignment:
Q  336 agtagtattataacattcatgcgatgaagagaaacaaacaaaaggaaattatagtgattgctgattattctgcgacatgatccctttg 423  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||    
T  10773418 agtagtattataacattcatgcgatgaagagaaacaaacaaaaggaaatt-tagtgattgttgattattctgcaacatgatccctttg 10773332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 65 - 171
Target Start/End: Complemental strand, 28009282 - 28009176
Alignment:
Q  65 aaatgctcttctcccaacaaaaaacgctccctcccaactgaactgtccaaaatactcccgcgttagttaactcatgcagatgtataacccaatgtaagtt 164  Q
    |||||||||||||||| ||||||  |||| ||||||||  |||| || ||||||| || |||| |||||||||| |||| |||||||||||  || ||||    
T  28009282 aaatgctcttctcccatcaaaaattgctcgctcccaaccaaactttcaaaaatacccctgcgtgagttaactcacgcaggtgtataacccagcgtgagtt 28009183  T
Q  165 aactcac 171  Q
    |||||||    
T  28009182 aactcac 28009176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 65 - 171
Target Start/End: Complemental strand, 28066585 - 28066479
Alignment:
Q  65 aaatgctcttctcccaacaaaaaacgctccctcccaactgaactgtccaaaatactcccgcgttagttaactcatgcagatgtataacccaatgtaagtt 164  Q
    |||||||||||||||| ||||||  |||| ||||||||  |||| || ||||||| || |||| |||||||||| |||| |||||||||||  || ||||    
T  28066585 aaatgctcttctcccatcaaaaattgctcgctcccaaccaaactttcaaaaatacccctgcgtgagttaactcacgcaggtgtataacccagcgtgagtt 28066486  T
Q  165 aactcac 171  Q
    |||||||    
T  28066485 aactcac 28066479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 12503299 - 12503345
Alignment:
Q  60 aagaaaaatgctcttctcccaacaaaaaacgctccctcccaactgaa 106  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||    
T  12503299 aagaaaattgctcttctcccaacaaaaaacactccctcccaactgaa 12503345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 19923529 - 19923471
Alignment:
Q  62 gaaaaatgctcttctcccaacaaaaaacgctccctcccaactgaactgtccaaaatact 120  Q
    ||||| ||||||||||||||||||||| |||| ||||||||  |||| |||||||||||    
T  19923529 gaaaattgctcttctcccaacaaaaaaagctcactcccaaccaaactttccaaaatact 19923471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 119
Target Start/End: Complemental strand, 34743821 - 34743764
Alignment:
Q  62 gaaaaatgctcttctcccaacaaaaaacgctccctcccaactgaactgtccaaaatac 119  Q
    ||||| ||||||||||||| ||||||| |||||||  ||||||||||| |||||||||    
T  34743821 gaaaattgctcttctcccagcaaaaaatgctccctttcaactgaactgcccaaaatac 34743764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 106
Target Start/End: Complemental strand, 10206109 - 10206078
Alignment:
Q  75 ctcccaacaaaaaacgctccctcccaactgaa 106  Q
    ||||||||||||||||||||||||||||||||    
T  10206109 ctcccaacaaaaaacgctccctcccaactgaa 10206078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 119
Target Start/End: Original strand, 24628219 - 24628276
Alignment:
Q  62 gaaaaatgctcttctcccaacaaaaaacgctccctcccaactgaactgtccaaaatac 119  Q
    |||||||||| ||||||||||||||||||||| |||| |||  || || |||||||||    
T  24628219 gaaaaatgcttttctcccaacaaaaaacgctcactcctaaccaaattgcccaaaatac 24628276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 60 - 155
Target Start/End: Complemental strand, 20595 - 20500
Alignment:
Q  60 aagaaaaatgctcttctcccaacaaaaaacgctccctcccaactgaactgtccaaaatactcccgcgttagttaactcatgcagatgtataaccca 155  Q
    ||||||| ||||||| |||||||||||||||||| || |||||||||||  |||||||||||| | || |||||||||| |||| |||||||||||    
T  20595 aagaaaattgctcttttcccaacaaaaaacgctcactaccaactgaacttcccaaaatactcctgtgtgagttaactcacgcaggtgtataaccca 20500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 336 - 387
Target Start/End: Original strand, 29707999 - 29708050
Alignment:
Q  336 agtagtattataacattcatgcgatgaagagaaacaaacaaaaggaaattat 387  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29707999 agtagtattataacattcatgcaatgaagagaaacaaacaaaaggaaattat 29708050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 31268106 - 31268054
Alignment:
Q  64 aaaatgctcttctcccaacaaaaaacgctccctcccaactgaactgtccaaaa 116  Q
    |||||||| |||||||||||||||| |||||||||||| |||| || ||||||    
T  31268106 aaaatgctattctcccaacaaaaaaggctccctcccaattgaaatgaccaaaa 31268054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 2169322 - 2169285
Alignment:
Q  63 aaaaatgctcttctcccaacaaaaaacgctccctccca 100  Q
    |||| |||||||||||||||||||||||||| ||||||    
T  2169322 aaaattgctcttctcccaacaaaaaacgctcactccca 2169285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 138
Target Start/End: Complemental strand, 35720373 - 35720297
Alignment:
Q  62 gaaaaatgctcttctcccaacaaaaaacgctccctcccaactgaactgtccaaaatactcccgcgttagttaactca 138  Q
    |||||| ||||||||||||| |||||| | || ||||||||  |||| | ||||||||||  |||| ||||||||||    
T  35720373 gaaaaaagctcttctcccaaaaaaaaatgttcactcccaacctaacttttcaaaatactcatgcgtgagttaactca 35720297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 60 - 143
Target Start/End: Complemental strand, 28999586 - 28999503
Alignment:
Q  60 aagaaaaatgctcttctcccaacaaaaaacgctccctcccaactgaactgtccaaaatactcccgcgttagttaactcatgcag 143  Q
    ||||||| ||||||||||||||| ||||| |||||||||||||||||||   ||||||||| || ||| |||||||||||||||    
T  28999586 aagaaaattgctcttctcccaactaaaaatgctccctcccaactgaacttctcaaaatacttccacgtgagttaactcatgcag 28999503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 138
Target Start/End: Original strand, 16585613 - 16585673
Alignment:
Q  78 ccaacaaaaaacgctccctcccaactgaactgtccaaaatactcccgcgttagttaactca 138  Q
    |||| |||||||| |||||| ||||||||||||||||||||||||  ||| ||||||||||    
T  16585613 ccaataaaaaacgttccctctcaactgaactgtccaaaatactcctccgtaagttaactca 16585673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 193
Target Start/End: Original strand, 40312321 - 40312356
Alignment:
Q  158 gtaagttaactcacgcagcatgacttaagtcacgct 193  Q
    ||||||||||||||||||| ||||||||||||||||    
T  40312321 gtaagttaactcacgcagcgtgacttaagtcacgct 40312356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 193
Target Start/End: Original strand, 40322397 - 40322432
Alignment:
Q  158 gtaagttaactcacgcagcatgacttaagtcacgct 193  Q
    ||||||||||||||||||| ||||||||||||||||    
T  40322397 gtaagttaactcacgcagcgtgacttaagtcacgct 40322432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 350 - 416
Target Start/End: Original strand, 25760148 - 25760214
Alignment:
Q  350 attcatgcgatgaagagaaacaaacaaaaggaaattatagtgattgctgattattctgcgacatgat 416  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||  |||||||    
T  25760148 attcatgcgatgaagagaaacaaacagatggaaattatagtgattgcttattattctgtaacatgat 25760214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 15239019 - 15238954
Alignment:
Q  62 gaaaaatgctcttctcccaacaaaaaacgctccctcccaactgaactgtccaaaatactcccgcgt 127  Q
    ||||| |||||||||||||||||||||||||| |||||||||||| || | ||| |||||||||||    
T  15239019 gaaaattgctcttctcccaacaaaaaacgctcactcccaactgaattgacgaaagtactcccgcgt 15238954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 12066836 - 12066883
Alignment:
Q  60 aagaaaaatgctcttctcccaac-aaaaaacgctccctcccaactgaa 106  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  12066836 aagaaaaatgctcttctcccaacaaaaaaacactccctcccaactgaa 12066883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 350 - 404
Target Start/End: Complemental strand, 19984531 - 19984477
Alignment:
Q  350 attcatgcgatgaagagaaacaaacaaaaggaaattatagtgattgctgattatt 404  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  19984531 attcatgcgatgaagagaaacaaacaaatggaaattatagtgattgcttattatt 19984477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 324
Target Start/End: Complemental strand, 12965603 - 12965528
Alignment:
Q  247 atgtttaatcaacacatagagtaagcagttggttttcctttattatcttactattgcccttaactatgaaagaaatca 324  Q
    ||||||||||||||||||||||  ||| | | ||||||| | |||||||  ||||||| |||||||||||||||||||    
T  12965603 atgtttaatcaacacatagagt--gcaatcgattttcctatgttatcttgttattgcctttaactatgaaagaaatca 12965528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 4783580 - 4783536
Alignment:
Q  62 gaaaaatgctcttctcccaacaaaaaacgctccctcccaactgaa 106  Q
    |||||||||| ||||||||||||||||| || |||||||||||||    
T  4783580 gaaaaatgcttttctcccaacaaaaaacacttcctcccaactgaa 4783536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 156
Target Start/End: Original strand, 37828446 - 37828540
Alignment:
Q  62 gaaaaatgctcttctcccaacaaaaaacgctccctcccaactgaactgtccaaaatactcccgcgttagttaactcatgcagatgtataacccaa 156  Q
    ||||| ||||||||||||||||||||||| || ||| ||    ||||| ||||||||| | ||||| |||||||||| |||| | ||||| ||||    
T  37828446 gaaaattgctcttctcccaacaaaaaacgatcactcacatacaaactgaccaaaataccctcgcgtgagttaactcacgcaggtatataatccaa 37828540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 690384 - 690333
Alignment:
Q  68 tgctcttctcccaacaa-aaaacgctccctcccaactgaactgtccaaaatac 119  Q
    ||||||||||||||||| ||||||||| |||||||| |||||| |||||||||    
T  690384 tgctcttctcccaacaaaaaaacgctcactcccaacagaactg-ccaaaatac 690333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 93
Target Start/End: Complemental strand, 29667827 - 29667795
Alignment:
Q  61 agaaaaatgctcttctcccaacaaaaaacgctc 93  Q
    |||||| ||||||||||||||||||||||||||    
T  29667827 agaaaattgctcttctcccaacaaaaaacgctc 29667795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 41358271 - 41358231
Alignment:
Q  62 gaaaaatgctcttctcccaacaaaaaacgctccctcccaac 102  Q
    ||||||||||||||||| ||||||||| |||| ||||||||    
T  41358271 gaaaaatgctcttctcctaacaaaaaatgctcactcccaac 41358231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 68 - 172
Target Start/End: Original strand, 36816938 - 36817044
Alignment:
Q  68 tgctcttctcccaacaaaaaac--gctccctcccaactgaactgtccaaaatactcccgcgttagttaactcatgcagatgtataacccaatgtaagtta 165  Q
    |||||||||||||| ||||||   |||||||||||||||||||  ||||||||||||||||| |||||||||| |||  | |||||||||  || |||||    
T  36816938 tgctcttctcccaataaaaaaaatgctccctcccaactgaacttcccaaaatactcccgcgtgagttaactcacgcatgtatataacccagcgtgagtta 36817037  T
Q  166 actcacg 172  Q
    | |||||    
T  36817038 agtcacg 36817044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 142
Target Start/End: Complemental strand, 32306543 - 32306469
Alignment:
Q  68 tgctcttctcccaacaaaaaacgctccctcccaactgaactgtccaaaatactcccgcgttagttaactcatgca 142  Q
    |||||||||||||||| ||||| ||| | |||||||||||| |||||||||  || |||| ||||||||||||||    
T  32306543 tgctcttctcccaacacaaaacactcgcgcccaactgaactttccaaaatatccctgcgtgagttaactcatgca 32306469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 11788177 - 11788222
Alignment:
Q  62 gaaaaatgctctt-ctcccaacaaaaaacgctccctcccaactgaa 106  Q
    ||||||||||||| ||||||||||||||| || |||||||||||||    
T  11788177 gaaaaatgctctttctcccaacaaaaaacacttcctcccaactgaa 11788222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 173
Target Start/End: Original strand, 29861426 - 29861531
Alignment:
Q  68 tgctcttctcccaacaaaaaacgctccctcccaactgaactgtccaaaatactcccgcgttagttaactcatgcagatgtataacccaatgtaagttaac 167  Q
    ||||||| |||||||||||||||||| ||| ||    ||||  |||||||||  |||||| ||||||||||  ||| ||||||||||| ||| | ||||     
T  29861426 tgctcttatcccaacaaaaaacgctcactctcatacaaactagccaaaatacctccgcgtgagttaactcacacaggtgtataacccagtgtgacttaag 29861525  T
Q  168 tcacgc 173  Q
    ||||||    
T  29861526 tcacgc 29861531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 15474718 - 15474674
Alignment:
Q  62 gaaaaatgctcttctcccaacaaaaaacgctccctcccaactgaa 106  Q
    |||||||| ||||||||||||||||||| || |||||||| ||||    
T  15474718 gaaaaatggtcttctcccaacaaaaaacacttcctcccaattgaa 15474674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 350 - 397
Target Start/End: Original strand, 46897 - 46944
Alignment:
Q  350 attcatgcgatgaagagaaacaaacaaaaggaaattatagtgattgct 397  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||    
T  46897 attcatgcgatgaagagaaacaaacaaatgaaaattatagtgattgct 46944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 350 - 416
Target Start/End: Complemental strand, 269533 - 269467
Alignment:
Q  350 attcatgcgatgaagagaaacaaacaaaaggaaattatagtgattgctgattattctgcgacatgat 416  Q
    |||||||||||||||||||||||||||| |||||||||||| ||   |||||||||||  |||||||    
T  269533 attcatgcgatgaagagaaacaaacaaatggaaattatagttatcaatgattattctgtaacatgat 269467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 61 - 106
Target Start/End: Original strand, 1885126 - 1885171
Alignment:
Q  61 agaaaaatgctcttctcccaacaaaaaacgctccctcccaactgaa 106  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||    
T  1885126 agaaaaatgctcttctcccatcaaaaaacactccctcccaactgaa 1885171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 100
Target Start/End: Complemental strand, 30259916 - 30259884
Alignment:
Q  68 tgctcttctcccaacaaaaaacgctccctccca 100  Q
    |||||||||||||||||||||||||| ||||||    
T  30259916 tgctcttctcccaacaaaaaacgctcactccca 30259884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1107 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1107
Description:

Target: scaffold1107; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 1460 - 1528
Alignment:
Q  68 tgctcttctcccaacaaaaaacgctccctcccaactgaactgtccaaaatactcccgcgttagttaact 136  Q
    |||||||||||||||| ||||||||| |  ||||||||||| |||||||||| || |||| ||||||||    
T  1460 tgctcttctcccaacagaaaacgctcgcgtccaactgaactttccaaaatacccctgcgtgagttaact 1528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 14710078 - 14710136
Alignment:
Q  61 agaaaaatgctcttctcccaacaaaaaacgctccctcccaactgaactgtccaaaatac 119  Q
    |||||||||||||||||||||||||||| |||| || |||||  |||| ||||||||||    
T  14710078 agaaaaatgctcttctcccaacaaaaaatgctcacttccaacccaactttccaaaatac 14710136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 15522 - 15590
Alignment:
Q  68 tgctcttctcccaacaaaaaacgctccctcccaactgaactgtccaaaatactcccgcgttagttaact 136  Q
    |||||||||||||||| ||||||||| |  ||||||||||| |||||||||| || | || ||||||||    
T  15522 tgctcttctcccaacagaaaacgctcgcgtccaactgaactttccaaaatacccctgtgtgagttaact 15590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 123378 - 123331
Alignment:
Q  60 aagaaaaatgctcttctccca-acaaaaaacgctccctcccaactgaa 106  Q
    ||||||||||||||||||||| | |||||| |||||||||||||||||    
T  123378 aagaaaaatgctcttctcccataaaaaaaatgctccctcccaactgaa 123331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University