View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9819_low_4 (Length: 372)
Name: NF9819_low_4
Description: NF9819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9819_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 52766862 - 52766523
Alignment:
| Q |
1 |
tgacatttgatgaagtggagttgttgtggagggagagagcttggggtaagaatcctcgcactaaaacccttcttgaacgtggaaatcagtcctattagta |
100 |
Q |
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| T |
52766862 |
tgacatttgatgaagtggagttgttgtggagggagagagcttggggtaagaatcctcgcactaaaacccttcttgaacgtggaaatcagtcctattagta |
52766763 |
T |
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| Q |
101 |
ctaggaatttgttcttgtttttctatgaattttgatttatgagaggcaaagtgattttttgggcactgattgctttcgattgcatgcatatgtctgcaaa |
200 |
Q |
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| T |
52766762 |
ctaggaa-ttgttcttgtttttctatgaattttgatttatgagaggcaaagtgattttttgggcactgattgctttcgattgc------atgtctgcaaa |
52766670 |
T |
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| Q |
201 |
tcttcaagcggcccagttcaatttccacacaagttttctctttcctaatactaataaacttacttggattttgtggctaatctttgaccactcaaacagc |
300 |
Q |
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| T |
52766669 |
tcttcaagtggcccagttcaaattccacaaaagttttctctttcctaatactaataaacttacttggattttgtgtctaatctttgaccactcaaacagc |
52766570 |
T |
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| Q |
301 |
tttacgtggattgtctttgtgaaagtttcagctcaccttcccaattt |
347 |
Q |
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| T |
52766569 |
tttacgtggactgtctttgtgaaagtttcagctcaccttcccaattt |
52766523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 46135659 - 46135566
Alignment:
| Q |
1 |
tgacatttgatgaagtggagttgttgtggagggagagagcttggggtaagaatcctcgcactaaaacccttcttgaacgtggaaatcagtccta |
94 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| ||||| |||||| || ||||||||||||||||||||||||||| ||||| |
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| T |
46135659 |
tgacatttgatgaagtggagttgttgtgaagggagagagcttagggtacttatcctcacattaaaacccttcttgaacgtggaaatcaatccta |
46135566 |
T |
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