View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9819_low_6 (Length: 313)
Name: NF9819_low_6
Description: NF9819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9819_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 107 - 303
Target Start/End: Original strand, 27574135 - 27574330
Alignment:
| Q |
107 |
ctttcataatttgggtatatacgtaggttttatctattgttttgtttgtctctgttaacatgtttttgtggtacaacaacaacaataacaacaggaattt |
206 |
Q |
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| T |
27574135 |
ctttcataatttgggtatatacgtaggttttatctattgttt-gtttgtctctgttaacatgtttttgtggtacaacaacaacaataacaacaggaattt |
27574233 |
T |
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| Q |
207 |
acagagtacacaaactttgatgagtgtttgcaatatattgaggattacatgatcaaacatggaccgtttgatggtcttcttggattctcacaggttc |
303 |
Q |
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| T |
27574234 |
acagagtacacaaactttgatgagtgtttgcaatatattgaggattacatgatcaaacatggaccgtttgatggtcttcttggattctcacaggttc |
27574330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 27574032 - 27574105
Alignment:
| Q |
1 |
tccttgtaatggcaaatctgatgttgaaggaattttcgaccctccttattatgagtggttccagttcaacaagg |
74 |
Q |
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| T |
27574032 |
tccttgtaatggcaaatctgatgttgaaggaattttcgaccctccttattatgagtggttccagttcaacaagg |
27574105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 14068165 - 14068116
Alignment:
| Q |
14 |
aaatctgatgttgaaggaattttcgaccctccttattatgagtggttcca |
63 |
Q |
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| T |
14068165 |
aaatcagatgttgaaggcattttcgatcctccttattatgaatggttcca |
14068116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 13118797 - 13118858
Alignment:
| Q |
8 |
aatggcaaatctgatgttgaaggaattttcgaccctccttattatgagtggttccagttcaa |
69 |
Q |
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| T |
13118797 |
aatgacaaatctgatgttgaagacattttcgaccctccttattatgagtggttcccgttcaa |
13118858 |
T |
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