View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9819_low_9 (Length: 269)
Name: NF9819_low_9
Description: NF9819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9819_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 6e-83; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 15 - 253
Target Start/End: Original strand, 1694635 - 1694879
Alignment:
| Q |
15 |
cagagattactccaataccattgctgatctgcaataatcagtaaaaatgtatattaataacatgggttaagtataaatcattcatccaatt--------- |
105 |
Q |
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| T |
1694635 |
cagagattactccaataccattactgatctgcaataatcagtaaaaatgtatattaataacatgggttaagtataaatctttaatccaattgaattacat |
1694734 |
T |
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| Q |
106 |
------attaactcacaagtcacaacaatactataggaatataaattaaatgaattaccagaacataaatgtcaaaggggtggagcagagcatatgttgt |
199 |
Q |
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| T |
1694735 |
acaattattaactcacaaatcacaacaatactataggaatataaatt---------accagaacataaatgtcaaaggggtggagcagagcatatgttgt |
1694825 |
T |
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| Q |
200 |
ccagcaaagtccattgaggaagttggtaagagagagccagaatggcatgtattt |
253 |
Q |
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| T |
1694826 |
ccagcaaagtccattgaggaagttggtaagagagagccagaatggcatgtattt |
1694879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 15 - 253
Target Start/End: Original strand, 1684214 - 1684444
Alignment:
| Q |
15 |
cagagattactccaataccattgctgatctgcaataatcagtaaaaatgtatattaat-aacatgggttaagtataaatcattcatccaattattaactc |
113 |
Q |
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| T |
1684214 |
cagagattactccaataccattgctgatctgcagtagtcagtgaaagtgtatattaattaatatgggttaagtataaatcattcatccaattattaactc |
1684313 |
T |
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| Q |
114 |
acaagtcacaacaatactataggaatataaattaaatgaattaccagaacataaatgtcaaaggggtggagcagagcatatgttgtccagcaaagtccat |
213 |
Q |
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| T |
1684314 |
acaagtcacaacaatactataggaatata---------aattaccagaacataaaggtcaaagggatggagcagagcatatgttgtccagcaaagtccat |
1684404 |
T |
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| Q |
214 |
tgaggaagttggtaagagagagccagaatggcatgtattt |
253 |
Q |
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| T |
1684405 |
tgaggaagttaaacacagagagccagaatggcatgtattt |
1684444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 146 - 253
Target Start/End: Original strand, 1699864 - 1699971
Alignment:
| Q |
146 |
taaatgaattaccagaacataaatgtcaaaggggtggagcagagcatatgttgtccagcaaagtccattgaggaagttggtaagagagagccagaatggc |
245 |
Q |
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| T |
1699864 |
taaattaattaccaagacataaatatccaatgggtggatgagagcatatgttgtccagcacaaaccattgaggaagttggttagagagagccaaaatggc |
1699963 |
T |
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| Q |
246 |
atgtattt |
253 |
Q |
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| T |
1699964 |
atgtattt |
1699971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 253
Target Start/End: Original strand, 1674181 - 1674282
Alignment:
| Q |
152 |
aattaccagaacataaatgtcaaaggggtggagcagagcatatgttgtccagcaaagtccattgaggaagttggtaagagagagccagaatggcatgtat |
251 |
Q |
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| T |
1674181 |
aattaccaggagataaatgtcgaaggggttgatgagagcatatgttgtccaacacaatccattaagaaagatagccagagagggcaagaatggcatgtat |
1674280 |
T |
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| Q |
252 |
tt |
253 |
Q |
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|| |
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| T |
1674281 |
tt |
1674282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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