View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9820_high_10 (Length: 276)

Name: NF9820_high_10
Description: NF9820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9820_high_10
NF9820_high_10
[»] chr4 (5 HSPs)
chr4 (5-276)||(30228829-30229103)
chr4 (69-276)||(30032444-30032654)
chr4 (69-275)||(30048691-30048900)
chr4 (69-275)||(30063032-30063241)
chr4 (102-275)||(30220061-30220234)


Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 5 - 276
Target Start/End: Complemental strand, 30229103 - 30228829
Alignment:
Q  5 cattaaggctagtcaatttctattgaatataatttcaataatcagaattgaccttttattattcattaattgatttgcacaggtaaaagatgtagagggt 104  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30229103 cattaaggctagtcaatttctattgaatataatctcaataatcaaaattgaccttttattattcattaattgatttgcacaggtaaaagatgtagagggt 30229004  T
Q  105 aagatgagatggcaaaaggttgaagtgaagcctgaagaacacttaaagattcccatatttcctgaaaccataaattca---tcatgtgaattatatgaca 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||    
T  30229003 aagatgagatggcaaaaggttgaagtgaagcctgaagaacacttaaagattcccatatttcctgaaaccataaattcatcatcatgtgaattatatgaca 30228904  T
Q  202 aatatgttagtaactatgtgacaagtattctaaatggaagaacaccacaaaataaaccactttgggaaattcata 276  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30228903 aatatgttagtaactatgtaacaagtattctaaatggaagaacaccacaaaataaaccactttgggaaattcata 30228829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 69 - 276
Target Start/End: Complemental strand, 30032654 - 30032444
Alignment:
Q  69 attaattgatttgcacaggtaaaagatgtagagggtaagatgagatggcaaaaggttgaagtgaagcctgaagaacacttaaagattcccatatttcctg 168  Q
    ||||||| ||||||| ||||||||||   |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30032654 attaattaatttgcaaaggtaaaagacaaagagggtaagatgagatggcgaaaggtcgaagtgaagcctgaagaacacttaaagattcccatatttcctg 30032555  T
Q  169 aaaccataaattca---tcatgtgaattatatgacaaatatgttagtaactatgtgacaagtattctaaatggaagaacaccacaaaataaaccactttg 265  Q
    ||||||||||||||   |||||||||||||||||||| ||| ||| | ||||||| ||||||||||||  || ||||||||||||| |||||||||||||    
T  30032554 aaaccataaattcatcatcatgtgaattatatgacaattattttaatgactatgtaacaagtattctagctgaaagaacaccacaagataaaccactttg 30032455  T
Q  266 ggaaattcata 276  Q
    |||||||||||    
T  30032454 ggaaattcata 30032444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 69 - 275
Target Start/End: Complemental strand, 30048900 - 30048691
Alignment:
Q  69 attaattgatttgcacaggtaaaagatgtagagggtaagatgagatggcaaaaggttgaagtgaagcctgaagaacacttaaagattcccatatttcctg 168  Q
    ||||||| ||||||||||||||||||   ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30048900 attaattaatttgcacaggtaaaagacaaagagggtgagatgagatggcaaaaggtcgaagtgaagcctgaagaacacttaaagattcccatatttcctg 30048801  T
Q  169 aaaccataaattca---tcatgtgaattatatgacaaatatgttagtaactatgtgacaagtattctaaatggaagaacaccacaaaataaaccactttg 265  Q
    ||||||||||||||   |||||||||||||||||||| ||| ||||| ||||||| ||||||||||||  |  || |||||||||| |||||||||||||    
T  30048800 aaaccataaattcatcatcatgtgaattatatgacaattatcttagtgactatgtaacaagtattctagctaaaaaaacaccacaagataaaccactttg 30048701  T
Q  266 ggaaattcat 275  Q
    ||||||||||    
T  30048700 ggaaattcat 30048691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 69 - 275
Target Start/End: Complemental strand, 30063241 - 30063032
Alignment:
Q  69 attaattgatttgcacaggtaaaagatgtagagggtaagatgagatggcaaaaggttgaagtgaagcctgaagaacacttaaagattcccatatttcctg 168  Q
    ||||||| ||||||||||||||||||   ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30063241 attaattaatttgcacaggtaaaagacaaagagggtgagatgagatggcaaaaggtcgaagtgaagcctgaagaacacttaaagattcccatatttcctg 30063142  T
Q  169 aaaccataaattca---tcatgtgaattatatgacaaatatgttagtaactatgtgacaagtattctaaatggaagaacaccacaaaataaaccactttg 265  Q
    ||||||||||||||   |||||||||||||||||||| ||| ||||| ||||||| ||||||||||||  |  || |||||||||| |||||||||||||    
T  30063141 aaaccataaattcatcatcatgtgaattatatgacaattatcttagtgactatgtaacaagtattctagctaaaaaaacaccacaagataaaccactttg 30063042  T
Q  266 ggaaattcat 275  Q
    ||||||||||    
T  30063041 ggaaattcat 30063032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 102 - 275
Target Start/End: Original strand, 30220061 - 30220234
Alignment:
Q  102 ggtaagatgagatggcaaaaggttgaagtgaagcctgaagaacacttaaagattcccatatttcctgaaaccataaattcatcatgtgaattatatgaca 201  Q
    ||||||||||||||||||| |||||||||||||| |||||| ||| |||||||||| | |||||||||||||| ||| |||||||    ||||||||| |    
T  30220061 ggtaagatgagatggcaaagggttgaagtgaagcttgaagagcacataaagattcctaaatttcctgaaaccacaaactcatcatcaatattatatgata 30220160  T
Q  202 aatatgttagtaactatgtgacaagtattctaaatggaagaacaccacaaaataaaccactttgggaaattcat 275  Q
    | ||| ||||| ||||||| ||||||||||||| |  ||||||||| ||| ||||||| |||||||||||||||    
T  30220161 attatcttagtgactatgtaacaagtattctaacttcaagaacacctcaagataaacccctttgggaaattcat 30220234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University