View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9820_high_3 (Length: 505)
Name: NF9820_high_3
Description: NF9820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9820_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Complemental strand, 51278422 - 51277926
Alignment:
| Q |
1 |
actcatcatggttcactcctttgccctccatttctccataaacctcctcagcttccaaaatcatcccattattacacaactgctcaatcaagttattaaa |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51278422 |
actcatcatggttcactcctttgccctccatttctccataaacctcctcagcttccaaaatcatcccattattacacaactgctcaatcaagttattaaa |
51278323 |
T |
|
| Q |
101 |
tgacaatgtatctggcttgcaacgagactcacccatgctcctgaaaatttcaatagcctccttgaattttccctcggcacaataaccatccaccatgaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51278322 |
tgacaatgtatctggcttgcaacgagactcacccatgctcctgaaaatttcaatcgcctccttgaattttccctcggcacaataaccatccaccatgaca |
51278223 |
T |
|
| Q |
201 |
ttaaagcttcccaaattaacagccaacttagccggaggattatgctccttgatcatcctattaaaaagcttcattgcctcgtcaaatttcccattcttgg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51278222 |
ttaaagcttcccaaattaacagccaacttagctggaggattatgctccttgatcatcctattaaaaagcttcattgcctcgtcaaatttcccattcttgg |
51278123 |
T |
|
| Q |
301 |
caagagcatcaagcaccgaattataagcaatgtcactcatcttctttccctctacaaaaacctcttgataacactccatagcctccttctccatcccctt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51278122 |
caagagcatcaagcaccgaattataagcaatgtcactcatcttctttccctctacaaaaacctcttgataacactccatagcctccttctccatcccctt |
51278023 |
T |
|
| Q |
401 |
gagaaaataccccttcatcaaacaccccaaaacaaccccatcttccacaaccccacctagcttctctttcaactcttgataaacccttaaaacacca |
497 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51278022 |
gagaaaataccccttcatcaaacaccccaaaacaaccccatcttccacaaccccacctagcttctctttcaactcttgataaacccttaaaacacca |
51277926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Complemental strand, 41618268 - 41617772
Alignment:
| Q |
1 |
actcatcatggttcactcctttgccctccatttctccataaacctcctcagcttccaaaatcatcccattattacacaactgctcaatcaagttattaaa |
100 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41618268 |
actcatcagggtttactcctttgccctccatttctccataaacctcctcagcttccaaaatcatcccattattacacaactgctcaatcaagttattaaa |
41618169 |
T |
|
| Q |
101 |
tgacaatgtatctggcttgcaacgagactcacccatgctcctgaaaatttcaatagcctccttgaattttccctcggcacaataaccatccaccatgaca |
200 |
Q |
| |
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|||||| ||||| ||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41618168 |
tgacaacgtatcaggcttacaacgagactcacccatgctcctgaaaacctcaatcgcctccttgaattttccctcagcacaataaccatccaccatgaca |
41618069 |
T |
|
| Q |
201 |
ttaaagcttcccaaattaacagccaacttagccggaggattatgctccttgatcatcctattaaaaagcttcattgcctcgtcaaatttcccattcttgg |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||| |||||||||| ||||||||||||||||||| |
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| T |
41618068 |
ttaaagcttcccaaattaacagccaacttagcaggaggattatgctccttgatcatcctatcaaagagcctcattgcctcatcaaatttcccattcttgg |
41617969 |
T |
|
| Q |
301 |
caagagcatcaagcaccgaattataagcaatgtcactcatcttctttccctctacaaaaacctcttgataacactccatagcctccttctccatcccctt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
41617968 |
caagagcatcaagcaccgaattataagcaatgtcactcatcttctttccctctacaaaaacctcttgataacactccatagcttccttctccatcccctt |
41617869 |
T |
|
| Q |
401 |
gagaaaataccccttcatcaaacaccccaaaacaaccccatcttccacaaccccacctagcttctctttcaactcttgataaacccttaaaacacca |
497 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||| |||||| |
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| T |
41617868 |
gagaaaataccccttcatcaaacaccccaaaacaaccccatcttccacaaccccacccaacttctctttcaactcttcataaacccttaagacacca |
41617772 |
T |
|
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