View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9820_low_1 (Length: 650)
Name: NF9820_low_1
Description: NF9820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9820_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 500; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 13 - 634
Target Start/End: Complemental strand, 41691200 - 41690600
Alignment:
| Q |
13 |
atgaatgaaaatggattcagattcttggattggaaatgtgtgctgatactatggtgggagatgagatgagaaggggaatatccgggggagnnnnnnngcg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41691200 |
atgaatgaaaatggattcagattcttggattggaaatgtgtgctgatactatggtgggagatgagatgagaaggggaatatccgggggagaaaaaaagcg |
41691101 |
T |
|
| Q |
113 |
gttaactacgggtatgagaagataattctaccaaaagttactaacgacaaaacgttatgatctgtttggtttaagaaaacgttttctgttttcactttta |
212 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41691100 |
gttaactacgggtatg---------------------ttactaacgacaaaacgttatgatctgtttggtttaagaaaacgttttctgttttcactttta |
41691022 |
T |
|
| Q |
213 |
attgtaaattgtccatgtttaattatattttcaaagatttgtacaagatacagtgaaaacagtcaatttaaacattttctnnnnnnnctaatttaacctt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41691021 |
attgtaaattgtccatgtttaattatattttcaaagatttgtacaagatacagtgaaaacagtcaatttaaacattttctaaaaaaactaatttaacctt |
41690922 |
T |
|
| Q |
313 |
aggccttgtttgtataaatggcttaattaagcacgcaggttatcatatacgtgtttatatataggctatttctataatgttttaaagtaagttgttttca |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41690921 |
aggccttgtttgtataaatggcttaattaagcacgcaggttatcatatacgtgtttatatataggctatttctataatgttttcaagtaagttgttttca |
41690822 |
T |
|
| Q |
413 |
taagcaatctgaagaatttaaggaaataagttgaaaactggttatgaacaagtctttcaaaagctcttctttgtccaatttcctcaagcagtgtcagtgt |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
41690821 |
taagcaatctgaagaatttaaggaaataagtggaaaactggttatgaacaagtctttcaaaagctcttctttgtccaattttctcaagcagtgtcagtgt |
41690722 |
T |
|
| Q |
513 |
aaaatgcaggtgagatgctggtaggacctgcaaaagttttcttaatggatgagatctcgaccggtctagatagttctacaaccttccaaatagtcagatt |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41690721 |
aaaatgcaggtgagatgctggtaggacctgcaaaagttttcttaatggatgagatctcgaccggtctagatagttctacaaccttccaaatagtcagatt |
41690622 |
T |
|
| Q |
613 |
cttgagacagctagttcatatc |
634 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
41690621 |
cttgagacagctagttcatatc |
41690600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 19538897 - 19538960
Alignment:
| Q |
31 |
agattcttggattggaaatgtgtgctgatactatggtgggagatgagatgagaaggggaatatc |
94 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| | ||||||||||||| ||||||||||| ||||| |
|
|
| T |
19538897 |
agattcttgggttggaaacgtgtgctgatattttggtgggagatgaaatgagaaggggcatatc |
19538960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 19538039 - 19537978
Alignment:
| Q |
32 |
gattcttggattggaaatgtgtgctgatactatggtgggagatgagatgagaaggggaatat |
93 |
Q |
| |
|
||||||||| |||||||||||||||||| | ||||||||||||||| ||||||||| |||| |
|
|
| T |
19538039 |
gattcttgggctggaaatgtgtgctgatattttggtgggagatgagaagagaaggggtatat |
19537978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 515 - 609
Target Start/End: Original strand, 19539226 - 19539320
Alignment:
| Q |
515 |
aatgcaggtgagatgctggtaggacctgcaaaagttttcttaatggatgagatctcgaccggtctagatagttctacaaccttccaaatagtcag |
609 |
Q |
| |
|
||||||||||| ||| | |||||||||||||||| |||| ||||||| || || || ||| | |||||||| |||||||||||||| ||||| |
|
|
| T |
19539226 |
aatgcaggtgaaatgttagtaggacctgcaaaagcactctttatggatggaatttcaactggtttggatagttccacaaccttccaaattgtcag |
19539320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 463
Target Start/End: Complemental strand, 35394561 - 35394502
Alignment:
| Q |
405 |
tgttttcataagcaatct-gaagaatttaaggaaataagttgaaaactggttatgaacaa |
463 |
Q |
| |
|
||||||||||||| |||| |||||||||| | ||||||||||||||| | |||||||||| |
|
|
| T |
35394561 |
tgttttcataagctatcttgaagaatttatgaaaataagttgaaaacagcttatgaacaa |
35394502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 515 - 609
Target Start/End: Original strand, 43526702 - 43526796
Alignment:
| Q |
515 |
aatgcaggtgagatgctggtaggacctgcaaaagttttcttaatggatgagatctcgaccggtctagatagttctacaaccttccaaatagtcag |
609 |
Q |
| |
|
||||||||||| ||| | |||||||||||||||| |||| ||||||| || || || ||| | |||||||| |||||||||||||| ||||| |
|
|
| T |
43526702 |
aatgcaggtgaaatgttagtaggacctgcaaaagcactctttatggatggaatttcaactggtttggatagttccacaaccttccaaattgtcag |
43526796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 350 - 390
Target Start/End: Complemental strand, 35535009 - 35534969
Alignment:
| Q |
350 |
ggttatcatatacgtgtttatatataggctatttctataat |
390 |
Q |
| |
|
|||||||||||| ||| ||||||||| |||||||||||||| |
|
|
| T |
35535009 |
ggttatcatataagtgcttatatataagctatttctataat |
35534969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 400 - 463
Target Start/End: Original strand, 39967922 - 39967986
Alignment:
| Q |
400 |
taagttgttttcataagcaatctga-agaatttaaggaaataagttgaaaactggttatgaacaa |
463 |
Q |
| |
|
|||||||||||||||||| |||||| |||| | | | ||||||||||||||| | |||||||||| |
|
|
| T |
39967922 |
taagttgttttcataagctatctgagagaactaatgaaaataagttgaaaacagcttatgaacaa |
39967986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University