View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9820_low_12 (Length: 401)
Name: NF9820_low_12
Description: NF9820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9820_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 22556906 - 22557291
Alignment:
| Q |
1 |
agcaataagtcatcaataactggtaaaaagtatccccatcagaagtgtaacccctttatcaagcctatacttaaaatcaatatgaatgtaactcacagat |
100 |
Q |
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| T |
22556906 |
agcaataagtcatcaataactggtaaaaagtatccccatcagaagtgtaacccctttatcaagcctatacttaaaatcaatatgaatgtaactcacagat |
22557005 |
T |
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| Q |
101 |
gccttagttttttcatgtttgctaatgaatgagggatattttcgctgaaatagttgcaagccatgtttctgccaaaaagaaggagcatcagaaaaactca |
200 |
Q |
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| T |
22557006 |
gccttagttttttcatgtttgctaatgaatgagggatattatcgctgaaatagttgcaagccatgtttctgccaaaaagaaggagcatcagaaaaactca |
22557105 |
T |
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| Q |
201 |
cagctacaaatacaggtataaatcaaaatcatcggaacagtaggcttacatatgtgtggcattggggggtaatccgtatggaatttcacccattatgctg |
300 |
Q |
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| T |
22557106 |
cagctacaaatacaggtataaatcaaaatcatcggaacagtaggcttacatatgtgtggcattggggggtaatccatatggaatttcacccattatgctg |
22557205 |
T |
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| Q |
301 |
ttggaactgacatcactgataaaaccagaatatggaagtaagtaaatcaaattatgactatatagtaaccaaaccatcctgtaaat |
386 |
Q |
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| T |
22557206 |
ttggaactgacatcactgataaaaccagaatatggaagtaagtaaatcaaattatgactatatagtaaccaaaccatcctgtaaat |
22557291 |
T |
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