View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9820_low_13 (Length: 400)
Name: NF9820_low_13
Description: NF9820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9820_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 19 - 393
Target Start/End: Complemental strand, 51232237 - 51231856
Alignment:
| Q |
19 |
gattataggatagaacagaaaattatggcagttatttgttcatgttttttctgatcgatctc------------ttgactgtgaataatttgattgcttg |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||| |
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| T |
51232237 |
gattataggatagaacagaaaattatggcagttatttgttcatgttttttctgatctcttgcagcataaattggttgactgtgaataatttgattgcttg |
51232138 |
T |
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| Q |
107 |
ctgtacatatatttctcctcacttcagtatagtaaatctaaaatctgaaaaccgatctatatatggagtctgttacattgtctccataccataccatagc |
206 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51232137 |
ctgtacat----ttctcctcacttcagtatagtaa-tctaaaatctaataaccgatctatatatggagtctgttacattgtctccataccataccatagc |
51232043 |
T |
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| Q |
207 |
taactaggataggtagtggagatattatatagccaaccaaggcatgtgattgcttttaagactaaagattcagggccaacaatgattgttagnnnnnnnn |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51232042 |
taactaggataggtagtggagatattatatagccaaccaaggcatgtgattgcttttaagactaaagattcagggccaacaatgattgttaggtttttgg |
51231943 |
T |
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| Q |
307 |
nnnnnnnccccttttaaccaatgttattcgtcgctcctaaaagatgcaattatttctctttaattcagagaatattacttcatctca |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
51231942 |
attttttccccttttaaccaatgttattcgtcgctcctaaaagatgcaattatttctcttaaattcagagaatattacttcatctca |
51231856 |
T |
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