View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9820_low_14 (Length: 359)
Name: NF9820_low_14
Description: NF9820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9820_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 7 - 183
Target Start/End: Original strand, 27436269 - 27436445
Alignment:
| Q |
7 |
atggtgttacaagattctctgatcttactccgagggagtttcgtaatagcatcttgggattaaaaggagtagggttaccgagacatgcaaaagctgcacc |
106 |
Q |
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| T |
27436269 |
atggtgttacaagattctccgatcttactccgagggagtttcgtaatagcatcttgggattaaaaggagtagggttaccgagacatgcaaaagctgcacc |
27436368 |
T |
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| Q |
107 |
tattctttcaacagagaaccttcctcgtgatttcgattggagagaaaaaggagcggttacccctgttaggaatcagg |
183 |
Q |
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| T |
27436369 |
tattctttcgaccgagaaccttcctcgtgattttgattggagagaaaaaggagcggttaccccggttaggaatcagg |
27436445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 7 - 183
Target Start/End: Complemental strand, 27549967 - 27549791
Alignment:
| Q |
7 |
atggtgttacaagattctctgatcttactccgagggagtttcgtaatagcatcttgggattaaaaggagtagggttaccgagacatgcaaaagctgcacc |
106 |
Q |
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| T |
27549967 |
atggtgttacaagattctccgatcttactccgagggagtttcgtaatagcatcttgggattaaaaggagtagggttaccgagacatgcaaaagctgcacc |
27549868 |
T |
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| Q |
107 |
tattctttcaacagagaaccttcctcgtgatttcgattggagagaaaaaggagcggttacccctgttaggaatcagg |
183 |
Q |
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| T |
27549867 |
tattctttcgtccgagaaccttcctcgtgattttgattggagagaaaaaggagcggttacccctgttaggaatcagg |
27549791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 7 - 183
Target Start/End: Original strand, 27944761 - 27944937
Alignment:
| Q |
7 |
atggtgttacaagattctctgatcttactccgagggagtttcgtaatagcatcttgggattaaaaggagtagggttaccgagacatgcaaaagctgcacc |
106 |
Q |
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| T |
27944761 |
atggtgttacaagattctccgatcttactccgagggagtttcgtaatagcatcttgggattaaaaggagtagggttaccgagacatgcaaaagctgcacc |
27944860 |
T |
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| Q |
107 |
tattctttcaacagagaaccttcctcgtgatttcgattggagagaaaaaggagcggttacccctgttaggaatcagg |
183 |
Q |
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| T |
27944861 |
tattctttcgtccgagaaccttcctcgtgattttgattggagagaaaaaggagcggttaccccggttaggaatcagg |
27944937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 272 - 342
Target Start/End: Original strand, 27436527 - 27436597
Alignment:
| Q |
272 |
aactatgaattagggtttctgcggttcaagttggagtttcagtacgattggtgcacttgaaggtgctcact |
342 |
Q |
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| T |
27436527 |
aactatgaattagggtttctgcggttcaagttggagtttcagtacgattggtgcactcgaaggtgctcact |
27436597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 272 - 342
Target Start/End: Original strand, 27945019 - 27945089
Alignment:
| Q |
272 |
aactatgaattagggtttctgcggttcaagttggagtttcagtacgattggtgcacttgaaggtgctcact |
342 |
Q |
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| T |
27945019 |
aactatgaattagggtttctgcggttcaagttggagtttcagtacgattggtgcactcgaaggtgctcact |
27945089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 272 - 338
Target Start/End: Complemental strand, 27549699 - 27549633
Alignment:
| Q |
272 |
aactatgaattagggtttctgcggttcaagttggagtttcagtacgattggtgcacttgaaggtgct |
338 |
Q |
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| T |
27549699 |
aactatgaattagggtttctgtggttcgagttggagtttcagtacaattggcgcactcgaaggtgct |
27549633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 166
Target Start/End: Original strand, 26765016 - 26765173
Alignment:
| Q |
9 |
ggtgttacaagattctctgatcttactccgagggagtttcgtaatagcatcttgggattaaaaggagtagggttaccgagacatgcaaaagctgcaccta |
108 |
Q |
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| T |
26765016 |
ggtgttacaagattctccgatcttaccccgagagagtttcgtaagagcgttttgggattgagaggggtggggttgccgaaagatgctaatgcagccccga |
26765115 |
T |
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| Q |
109 |
ttctttcaacagagaaccttcctcgtgatttcgattggagagaaaaaggagcggttac |
166 |
Q |
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| T |
26765116 |
ttcttccgacagataatcttcccaaggattttgattggagagagaaaggagccgttac |
26765173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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