View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9820_low_15 (Length: 353)
Name: NF9820_low_15
Description: NF9820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9820_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 22 - 342
Target Start/End: Original strand, 35527222 - 35527542
Alignment:
| Q |
22 |
aagtctttttgaagcagatatccactctattatgttcattattatcgttcattcatcaattaacagtgctccataatttttatgtgtcatgtagaatcac |
121 |
Q |
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| T |
35527222 |
aagtctttttgaagcagatatccactctattatgttcattattatcgttcattcatcaattaacagtgctccataatttttatgtgccatgtagaatcac |
35527321 |
T |
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| Q |
122 |
acacttgttgtggtggaagcagatggaaactacgtgcacccattcacggttgatagcatagacatctactcaggtgaaacctactcagtactcctgcata |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
35527322 |
acacttgttgtggtggaagcagatggaaactacgtgcacccattcacggttgatagcatagacatctactcaggtgaaacctactcagtactcttacata |
35527421 |
T |
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| Q |
222 |
cagaccaagacccaagccaaaactactggctctcagtcagcattataagcagaaaatcagacacaccacaagccctaacaatccttaactataatacaaa |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35527422 |
cagaccaagacccaagccaaaactactggctctcagtcggcattataagcagaaaatcagacacaccacaagccctaacaatccttaactataatacaaa |
35527521 |
T |
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| Q |
322 |
ccctgcttcaactttccctat |
342 |
Q |
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|||||||||||||||||||| |
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| T |
35527522 |
tcctgcttcaactttccctat |
35527542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 114 - 312
Target Start/End: Original strand, 35509117 - 35509315
Alignment:
| Q |
114 |
agaatcacacacttgttgtggtggaagcagatggaaactacgtgcacccattcacggttgatagcatagacatctactcaggtgaaacctactcagtact |
213 |
Q |
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| T |
35509117 |
agaatcacaaacttattgtagtggaagcagatggaaactatgtgcacccattcgcagtcgatgacatcgacatctactcaggtgaaacctactcagtcct |
35509216 |
T |
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| Q |
214 |
cctgcatacagaccaagacccaagccaaaactactggctctcagtcagcattataagcagaaaatcagacacaccacaagccctaacaatccttaacta |
312 |
Q |
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| T |
35509217 |
ccttacaacagaccaagaccctaaaaaaaactactggctttcaatcggagttagaggtagaaaaccaagcacaccacaagccctaacaatccttaacta |
35509315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 112 - 312
Target Start/End: Original strand, 35541741 - 35541941
Alignment:
| Q |
112 |
gtagaatcacacacttgttgtggtggaagcagatggaaactacgtgcacccattcacggttgatagcatagacatctactcaggtgaaacctactcagta |
211 |
Q |
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||||||||||| ||| |||| || ||||| ||||||||||||||||||||||| | |||||| ||||||||| |||||||||||||||||||||||| |
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| T |
35541741 |
gtagaatcacaaactacttgtagtagaagctgatggaaactacgtgcacccatttgcagttgatgacatagacatatactcaggtgaaacctactcagta |
35541840 |
T |
|
| Q |
212 |
ctcctgcatacagaccaagacccaagccaaaactactggctctcagtcagcattataagcagaaaatcagacacaccacaagccctaacaatccttaact |
311 |
Q |
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||| | | ||| ||||| |||| | ||||||||||| | || || | ||| | | |||||| | |||||||||||||||||||||||||||||| |
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| T |
35541841 |
ctcattaaaacaaaccaaaaccccacaaaaaactactggattgcaatcggtgttagaggtagaaaacctaacacaccacaagccctaacaatccttaact |
35541940 |
T |
|
| Q |
312 |
a |
312 |
Q |
| |
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| |
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| T |
35541941 |
a |
35541941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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