View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9820_low_16 (Length: 351)
Name: NF9820_low_16
Description: NF9820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9820_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 2 - 257
Target Start/End: Original strand, 19094878 - 19095131
Alignment:
| Q |
2 |
catgtggcttgtagcatgcatcacgcttcttcctgtggccgactcatctataattcttctttccttatcccatttcgcctcatcgaaacattcatagtga |
101 |
Q |
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| T |
19094878 |
catgtggcttgtagcatgcatcactcttcttctagtggctgactcatctataattcttctttccttatcccattttgcctcatcgaaacgttcatagtga |
19094977 |
T |
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| Q |
102 |
ttatatatgctaagaaatcacttttaatattcttgtcaaaagtataacacacgaccacgaaattgtctagtttgaatgatttgacatgtttcaaggtctt |
201 |
Q |
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| T |
19094978 |
ttatatatcctaagaaatcacttttaatattcttgtcaaaagtata--acacgaccacgaaattgtctagtttgaatgatttgacatgtttcaaggtctt |
19095075 |
T |
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| Q |
202 |
gttttcatttttcttgtcccttgcgtgtccattggtttatttacaaatactcaacc |
257 |
Q |
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| T |
19095076 |
gttttcatttttcttgtcccttgcgtgtccattggtttatttacaaatactcaacc |
19095131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 19095164 - 19095214
Alignment:
| Q |
284 |
aagatttaaaactatctcctaaatgatgctaaaacaactatatgacaaact |
334 |
Q |
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| T |
19095164 |
aagatttaaaactatctcctaaatgaagctaaaacaactatatgacaaact |
19095214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 9830135 - 9830062
Alignment:
| Q |
16 |
catgcatcacgcttcttcctgtggccgactcatctataattcttctttccttatcccatttcgcctcatcgaaa |
89 |
Q |
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| T |
9830135 |
catgcatcacgcttcttccaatggttgactcatttgtgatgcttcattccttatcgcatttcgcctcaccgaaa |
9830062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 23055241 - 23055205
Alignment:
| Q |
162 |
aattgtctagtttgaatgatttgacatgtttcaaggt |
198 |
Q |
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|||| ||| |||||||||||||||||||||||||||| |
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| T |
23055241 |
aattatctggtttgaatgatttgacatgtttcaaggt |
23055205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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