View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9820_low_18 (Length: 310)
Name: NF9820_low_18
Description: NF9820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9820_low_18 |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0793 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 310
Target Start/End: Original strand, 714460 - 714754
Alignment:
| Q |
16 |
atatggataataatgtattttatcacataaaccatcaagcgaataaaataataagtcgtaataaaacaattataaagggttcactgaatgactgactacc |
115 |
Q |
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| T |
714460 |
atatggataataatgtattttatcacagaaaccatcaagcgaataaaataataagtcgtaataaaacaactataaagggttcactgaatgactgactacc |
714559 |
T |
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| Q |
116 |
caagcaatgtctaactaataatcaaatactgacnnnnnnnncattccaaacataaatggtcaatgtcaaactaatgcaatcatcgctttgacaccatttt |
215 |
Q |
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| T |
714560 |
caaccaatgtctaactaataatcaaatactgacaaaaaaaacattccaaacataaatggtcaatgtcaaactaatgcaatcatcgctttgacaccatttt |
714659 |
T |
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| Q |
216 |
gtccttagcttatgtaatttgatcaattgtcttgggtaatttgaagctaatcatgtgttgatgtattgagttgtaaatcatcaacgatatccacc |
310 |
Q |
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| T |
714660 |
gtccttagcttatgtaatttgatcaattgtcttgggtaatttgaagctaatcatgtgttgatgtattgagttgtaaatcatcaacgatatccacc |
714754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 310
Target Start/End: Original strand, 3765131 - 3765430
Alignment:
| Q |
16 |
atatggataataatgtattttatcacataaaccatcaagcgaataaaataataagtcgtaataaaacaattataaagggttcactgaatgactgactacc |
115 |
Q |
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| T |
3765131 |
atatgaataataatgtattttatcacataaaccatcaagcgaataaaataataagtcgtaataaaacagctataaggggttcactgaatgactgactacc |
3765230 |
T |
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| Q |
116 |
caagcaatgtctaactaataatcaaatactgacnnnnnnnn-----cattccaaacataaatggtcaatgtcaaactaatgcaatcatcgctttgacacc |
210 |
Q |
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| T |
3765231 |
caaccaatgtctaactaataattaaatactgacaaaaaaaaaaaaacattccaaaaataaatgatcaatgtcaaactcatgcaatcatcgctttgacacc |
3765330 |
T |
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| Q |
211 |
attttgtccttagcttatgtaatttgatcaattgtcttgggtaatttgaagctaatcatgtgttgatgtattgagttgtaaatcatcaacgatatccacc |
310 |
Q |
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| T |
3765331 |
attttgtccttagcttatgtaatttgttctattgtcttgggtagtttgaagctaatcatgtgttgatgtattgagttgtaaatcatcaacgatatccacc |
3765430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 270 - 310
Target Start/End: Original strand, 801989 - 802029
Alignment:
| Q |
270 |
gtgttgatgtattgagttgtaaatcatcaacgatatccacc |
310 |
Q |
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| T |
801989 |
gtgttgatgtattgagttgtaaatcatcaacgatatccacc |
802029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0793 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0793
Description:
Target: scaffold0793; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 310
Target Start/End: Original strand, 3932 - 4030
Alignment:
| Q |
212 |
ttttgtccttagcttatgtaatttgatcaattgtcttgggtaatttgaagctaatcatgtgttgatgtattgagttgtaaatcatcaacgatatccacc |
310 |
Q |
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| T |
3932 |
ttttgtccttcgcttctgtcctttgctcacttgtcttgggtcatttgcagctcatcctgtgttgctgtcttgcgttgtaaatcttcaactctatccacc |
4030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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