View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9820_low_2 (Length: 611)
Name: NF9820_low_2
Description: NF9820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9820_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 561; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 1 - 597
Target Start/End: Complemental strand, 50216794 - 50216193
Alignment:
| Q |
1 |
agatttatctccaatcttccccaatcacaattttttatacttatcatttttagaacaccgttagtgatttaagaaaatgacataattgtatgtaatcacc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
50216794 |
agatttatctccaatcttccccaatcacaattttttatacttatcatttttagaacaccgttagtgatttaagaaaatgacataattgaatgtaatcacc |
50216695 |
T |
|
| Q |
101 |
ggtacaaatcaatgtaaaactcttatgttagttgcagaatttgaactgagaatggtgtatgaattctatggcttgaatttggtgcctttacgagttttgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
50216694 |
ggtacaaatcaatgtaaaactcttatgttagttgcagaatttgaactgagaatggtgcatgaattctatggcttgaatttggtgcctttacgagttttgt |
50216595 |
T |
|
| Q |
201 |
gtggaattacttgaactttgatatacttgtca----gttgcttttcattggttatcttattctttctaggcgagttcaattgcgtgattaattttgatct |
296 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50216594 |
gtggaattacttgaactttgatatacttgtcagactgttgcttttcattggttatcttattctttctaggcgagttcaattgcgtgattaattttgatct |
50216495 |
T |
|
| Q |
297 |
tgtaaacaggcacgtgtctaccgggaggagaataatgtagttgatttgtacatcatgctccttagatttataaggtaaaacattgacggtttatggattt |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50216494 |
tgtaaacaggcacgtgtctaccgggaggagaataatgtagtcgatttgtacatcatgctccttagatttataaggtaaaacattgacggtttatggattt |
50216395 |
T |
|
| Q |
397 |
tctttaaacacataaatttgcagttaaattaa-gtataacctttccatttttgtatcttaatgtattatcttcgcatcttttaaagtttggtttccgaga |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50216394 |
tctttaaacacataaatttgcagttaaattaaggtataacctttccatttttgtatcttaatgtattatcttcgcatcttttaaagtttggtttccgaga |
50216295 |
T |
|
| Q |
496 |
cgataccttatcatcgagactaccaagctacacttgctaacgaacgagcagcatataagaaggtgagaagctgctttgcatgtttttatagtagatgtcc |
595 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
50216294 |
cgataccttatcatcgagactaccaagctacacttgctaacgaacgagcagcatataagaaggtgagaagctgctttgcatgtttttatggtagatgtcc |
50216195 |
T |
|
| Q |
596 |
at |
597 |
Q |
| |
|
|| |
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|
| T |
50216194 |
at |
50216193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 10164463 - 10164508
Alignment:
| Q |
54 |
aacaccgttagtgatttaagaaaatgacataattgtatgtaatcac |
99 |
Q |
| |
|
||||||| |||| ||||||||||||| |||||||| |||||||||| |
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|
| T |
10164463 |
aacaccggtagtaatttaagaaaatggcataattgaatgtaatcac |
10164508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 32691744 - 32691788
Alignment:
| Q |
55 |
acaccgttagtgatttaagaaaatgacataattgtatgtaatcac |
99 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||| |||||||||| |
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|
| T |
32691744 |
acaccggtagtaatttaagaaaatgacataattgaatgtaatcac |
32691788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 64 - 98
Target Start/End: Complemental strand, 8917585 - 8917551
Alignment:
| Q |
64 |
gtgatttaagaaaatgacataattgtatgtaatca |
98 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
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|
| T |
8917585 |
gtgatttaagaaaatgacataattgaatgtaatca |
8917551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 10893915 - 10893883
Alignment:
| Q |
67 |
atttaagaaaatgacataattgtatgtaatcac |
99 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
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|
| T |
10893915 |
atttaagaaaatgacataattgaatgtaatcac |
10893883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 18750889 - 18750921
Alignment:
| Q |
67 |
atttaagaaaatgacataattgtatgtaatcac |
99 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
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|
| T |
18750889 |
atttaagaaaatgacataattgaatgtaatcac |
18750921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 645345 - 645377
Alignment:
| Q |
67 |
atttaagaaaatgacataattgtatgtaatcac |
99 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
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|
| T |
645345 |
atttaagaaaatgacataattgaatgtaatcac |
645377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 62 - 98
Target Start/End: Original strand, 13709194 - 13709230
Alignment:
| Q |
62 |
tagtgatttaagaaaatgacataattgtatgtaatca |
98 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||| |
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|
| T |
13709194 |
tagtgatttaagaaaatgacaaaattgaatgtaatca |
13709230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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