View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9820_low_21 (Length: 297)
Name: NF9820_low_21
Description: NF9820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9820_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 119; Significance: 8e-61; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 2746797 - 2746927
Alignment:
| Q |
1 |
gtgatcatctgatggttgaacaactaattcgccttgtatggctgaatgcttctcagccacttcatgtgctacgtgaattattacatgttcaagctttgtt |
100 |
Q |
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| T |
2746797 |
gtgatcatctgatggttgaacaactaatttgccttgtatggctgaatgcttctcagccacttcatgtgctaattgaattattacatgttcaagctttgtt |
2746896 |
T |
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| Q |
101 |
cccacagcaagtagtagctgaaaaatgcaaa |
131 |
Q |
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| T |
2746897 |
cccacagcaagtagtagctgaaaaatgcaaa |
2746927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 2754586 - 2754716
Alignment:
| Q |
1 |
gtgatcatctgatggttgaacaactaattcgccttgtatggctgaatgcttctcagccacttcatgtgctacgtgaattattacatgttcaagctttgtt |
100 |
Q |
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||||||||| ||||||||||||| |||||| |||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2754586 |
gtgatcatcggatggttgaacaattaattcaccttgtatggctgaatgcttttcagctacttcatgtgctaattgaattattacatgttcaagctttgtt |
2754685 |
T |
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| Q |
101 |
cccacagcaagtagtagctgaaaaatgcaaa |
131 |
Q |
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| T |
2754686 |
cccacagcaagaagaagcttaagaatgcaaa |
2754716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 278
Target Start/End: Original strand, 2746934 - 2747005
Alignment:
| Q |
209 |
aaaatttacatttatatgcatgcacat--attagactagttcaggtcgttcgataaagatctatgacctatt |
278 |
Q |
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||||||||||||||||||||||||||| |||| | |||||||||| |||||| |||||||||||||||||| |
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| T |
2746934 |
aaaatttacatttatatgcatgcacatagattataatagttcaggtggttcgacaaagatctatgacctatt |
2747005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 55324008 - 55323886
Alignment:
| Q |
1 |
gtgatcatctgatggttgaacaactaattcgccttgtatggctgaatgcttctcagccacttcatgtgctacgtgaattattacatgttcaagctttgtt |
100 |
Q |
| |
|
||||| |||||||||||| |||||||| || |||| |||||||| |||||| ||||| |||||||| |||| || |||||||||| || ||||||||| |
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| T |
55324008 |
gtgattatctgatggttgtacaactaagtcaccttctatggctgcatgcttttcagctacttcatgagctagttgggttattacatgctccagctttgtt |
55323909 |
T |
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| Q |
101 |
cccacagcaagtagtagctgaaa |
123 |
Q |
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||||| | ||||| |||||||| |
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| T |
55323908 |
cccacggaaagtaaaagctgaaa |
55323886 |
T |
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