View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9820_low_30 (Length: 250)
Name: NF9820_low_30
Description: NF9820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9820_low_30 |
 | |
|
| [»] scaffold0793 (3 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 752175 - 752400
Alignment:
| Q |
15 |
agtgacaatttacaacttataattttagtcactcaaaatcacgtcttagtttctaaagagattctactcatcattttatatttacatcttgtatatcaaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
752175 |
agtgacaatttacaacttataattttagtcactcaaaatcacgtcttagtttctaaagagattctactcatcattttatatttacatcttgtatatcaaa |
752274 |
T |
|
| Q |
115 |
aaaccaaattcctacaccatctatgatcactagattatcatacacgcagcaaaatttgcgtctaattacaataaccctgatgatgtatttttaaacaata |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
752275 |
aaaccaaattcctacaccatctatgatcactagattatcatacacgcagcaaaatttgcgtctaattacaataaccctgatcatgtacttttaaacaata |
752374 |
T |
|
| Q |
215 |
ttagtatgactcaaataaactctctg |
240 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
752375 |
ttagtatgactcaaataaactctctg |
752400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 714850 - 715075
Alignment:
| Q |
15 |
agtgacaatttacaacttataattttagtcactcaaaatcacgtcttagtttctaaagagattctactcatcattttatatttacatcttgtatatcaaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
714850 |
agtgacaatttacaacttataattttagtcactcaaaatcacgtcttagtttctaaagagattctactcatcattttatatttacatcttgtatatcaaa |
714949 |
T |
|
| Q |
115 |
aaaccaaattcctacaccatctatgatcactagattatcatacacgcagcaaaatttgcgtctaattacaataaccctgatgatgtatttttaaacaata |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||| |
|
|
| T |
714950 |
aaaccaaattcctacaccatctatgatcactagattatcatacacgcagcaaaatttgcgtctaattacaataaccctgatcatttacttttaaacaata |
715049 |
T |
|
| Q |
215 |
ttagtatgactcaaataaactctctg |
240 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
715050 |
ttagtatgactcaaataaactctctg |
715075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 127 - 240
Target Start/End: Complemental strand, 731026 - 730913
Alignment:
| Q |
127 |
tacaccatctatgatcactagattatcatacacgcagcaaaatttgcgtctaattacaataaccctgatgatgtatttttaaacaatattagtatgactc |
226 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
731026 |
tacaccatctatgatcattagattatcatacaccatgcaaaatttgcgtctaattacaataaccctgatcatgtacttttaaacaatattagtatgactc |
730927 |
T |
|
| Q |
227 |
aaataaactctctg |
240 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
730926 |
aaataaactctctg |
730913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0793 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: scaffold0793
Description:
Target: scaffold0793; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 4126 - 4351
Alignment:
| Q |
15 |
agtgacaatttacaacttataattttagtcactcaaaatcacgtcttagtttctaaagagattctactcatcattttatatttacatcttgtatatcaaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4126 |
agtgacaatttacaacttataattttagtcactcaaaatcacgtcttagtttctaaagagattctactcatcattttatatttacatcttgtatatcaaa |
4225 |
T |
|
| Q |
115 |
aaaccaaattcctacaccatctatgatcactagattatcatacacgcagcaaaatttgcgtctaattacaataaccctgatgatgtatttttaaacaata |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||| |
|
|
| T |
4226 |
aaaccaaattcctacaccatctatgatcactagattatcatacacgcagcaaaatttgcgtctaattacaataaccctgatcatttacttttaaacaata |
4325 |
T |
|
| Q |
215 |
ttagtatgactcaaataaactctctg |
240 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
4326 |
ttagtatgactcaaataaactctctg |
4351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0793; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 140 - 240
Target Start/End: Original strand, 2932 - 3032
Alignment:
| Q |
140 |
atcactagattatcatacacgcagcaaaatttgcgtctaattacaataaccctgatgatgtatttttaaacaatattagtatgactcaaataaactctct |
239 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2932 |
atcactagattatcatacaccatgcaaaatttgcgtctaattacaataaccctgatcatgtacttttaaacaatattagtatgactcaaataaactctct |
3031 |
T |
|
| Q |
240 |
g |
240 |
Q |
| |
|
| |
|
|
| T |
3032 |
g |
3032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0793; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 2083 - 2146
Alignment:
| Q |
177 |
taattacaataaccctgatgatgtatttttaaacaatattagtatgactcaaataaactctctg |
240 |
Q |
| |
|
||||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2083 |
taattacaataactctgatcatgtacttttaaacaattttagtatgactcaaataaactctctg |
2146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University