View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9820_low_35 (Length: 220)
Name: NF9820_low_35
Description: NF9820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9820_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 12 - 200
Target Start/End: Original strand, 36724906 - 36725096
Alignment:
| Q |
12 |
gagaagaacatgaatatcatcctcataattacttccacatattacacaatcaattggacaatgaacccatttactacttaggcgtgctcatgtatgaaaa |
111 |
Q |
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| T |
36724906 |
gagaagaacatgaatgccatcctcataattacttccacatattacacaatcaattggacaatgaacccatttactacttaggcgtgctcatgtatgaaaa |
36725005 |
T |
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| Q |
112 |
caacaacg--acacacgccaaacaagattttttattttaggtggaactttgagtttccaaactagattccaatgatctggtaaatgcaaat |
200 |
Q |
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| T |
36725006 |
cagcaacgacacacacgccaaacaagattttttattttaggtggaactttgagtttccaaactagattccaatgatccagtaaatgcaaat |
36725096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 716823 - 716721
Alignment:
| Q |
12 |
gagaagaacatgaatatcatcctcataattacttccacatattacacaatcaattggacaatgaacccatttactacttaggcgtgctcatgtatgaaaa |
111 |
Q |
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| T |
716823 |
gagaagaacatgaatgatttcctcataattactttcacacattacacaatctattggacaatgaacctatctactaattaggtgtgctcatgttggaaaa |
716724 |
T |
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| Q |
112 |
caa |
114 |
Q |
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| T |
716723 |
caa |
716721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 12226116 - 12226075
Alignment:
| Q |
18 |
aacatgaatatcatcctcataattacttccacatattacaca |
59 |
Q |
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| T |
12226116 |
aacatgaatgtcatcctcataattatttccacaaattacaca |
12226075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 33907504 - 33907552
Alignment:
| Q |
125 |
cgccaaacaagattttttattttaggtggaactttgagtttccaaacta |
173 |
Q |
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| T |
33907504 |
cgccaaattagattttttattttaggtggcactttgagcttccacacta |
33907552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 8266782 - 8266718
Alignment:
| Q |
137 |
ttttttattttaggtggaactttgagtttccaaactagattccaatgatctggtaaatgcaaatg |
201 |
Q |
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| T |
8266782 |
ttttttatcttaggtaggactttgagtttccaaactaaatttcaacgacatggtatatgcaaatg |
8266718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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