View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9820_low_4 (Length: 583)
Name: NF9820_low_4
Description: NF9820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9820_low_4 |
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| [»] scaffold0085 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 319 - 572
Target Start/End: Original strand, 47836978 - 47837231
Alignment:
| Q |
319 |
cttcattataagaaaattacagagtgccttaaatgactattattaccatggtttcaaatcgcggtccacatctgcaactgcgaccgctaatatcgctgat |
418 |
Q |
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| T |
47836978 |
cttcattataagaaaattacagtgtgccttaaatgactattattaccatggtttcaaatcgcggtccacatctgcaactgcgaccgctaatatcgctgat |
47837077 |
T |
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| Q |
419 |
gtggtagcctctacatcgtcatcgcaattgcagtgtgatcttaaatcacttgtatgcttgcatcataactgcatcaaacgatttcggccatgtttgttca |
518 |
Q |
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| T |
47837078 |
gtggtagcctctacatcgtcatcgcaattgcagtgtgatctaaaatcacttgtatgcttgcatcataactgcatcaaacaatttcggccatgtttgttca |
47837177 |
T |
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| Q |
519 |
aatcttctcaccaaaacataacatttcagaaccccaaatgtcagtctacttcat |
572 |
Q |
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| T |
47837178 |
aatcttctcaccaaaatataaaatttcagaaccccaaatgtcagtctacttcat |
47837231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 47836675 - 47836847
Alignment:
| Q |
14 |
atattcacatggggggtttctaccaccttcatgattgtattcctcgcccctgtcacatttgtacaaggcttgactcaaccagaaaagcttgagaaaatgt |
113 |
Q |
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| T |
47836675 |
atattcacatggggggtttctaccaccttcatgattgtattcctcgcccctgtcacatttgtacaaggcttgactcaacctgaaaagcttgagaaaatgt |
47836774 |
T |
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| Q |
114 |
tcccattcttgacagagatacttaaaacgtaagatattgcacacacaagggtcaaatattacctgcttctata |
186 |
Q |
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| T |
47836775 |
tcccattcctgacagagatacttaaaacgtaagatattgcacacacaagggtcaaatattacctgcttctata |
47836847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 443 - 532
Target Start/End: Complemental strand, 38750884 - 38750795
Alignment:
| Q |
443 |
caattgcagtgtgatcttaaatcacttgtatgcttgcatcataactgcatcaaacgatttcggccatgtttgttcaaatcttctcaccaa |
532 |
Q |
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| T |
38750884 |
caatagcattgtgatcttcaatcacgtgtatggtcgcatcggaactgcatcacacgattttggtaatgtttgttcaaatcttctcaccaa |
38750795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0085 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 528
Target Start/End: Complemental strand, 49972 - 49885
Alignment:
| Q |
441 |
cgcaattgcagtgtgatcttaaatcacttgtatgcttgcatcataactgcatcaaacgatttcggccatgtttgttcaaatcttctca |
528 |
Q |
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| T |
49972 |
cgcaagtgtagtgttatcttcaatcatgtgtatgggcgcatcgtaactgcataacacgatttcggccatgtttgttcaaaccttctca |
49885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 146
Target Start/End: Complemental strand, 4706753 - 4706681
Alignment:
| Q |
74 |
gtacaaggcttgactcaaccagaaaagcttgagaaaatgttcccattcttgacagagatacttaaaacgtaag |
146 |
Q |
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| T |
4706753 |
gtacaaggcttgactcaactagaaaaacttcagaaaatgttcccttttctggcaggggtacttaaaaagtaag |
4706681 |
T |
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