View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9820_low_5 (Length: 561)
Name: NF9820_low_5
Description: NF9820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9820_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 9 - 545
Target Start/End: Complemental strand, 42622294 - 42621762
Alignment:
| Q |
9 |
tggtgttcagaaggagcttgttggtgttctcacaaagaaatttgaaataactcaggtcattgccaattgcaaaggtttttcaaacaatgtgatttatcaa |
108 |
Q |
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| T |
42622294 |
tggtgttcagaaggagcttgttggtgttctcacaaagaaatttgaaataactcaggtcattgccaattgcaaaggtttttcaaacaatgtgatttatcaa |
42622195 |
T |
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| Q |
109 |
ctcttttcgtgaagaaatttaactgtgactaagccatcgagcgttgattagttcaaaatgcgttgagaatgttttcaatatgtcacagcaacttgaaata |
208 |
Q |
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| T |
42622194 |
ctcttttcgtgaagaaatttaactgtgactaagccatcgagcgttgattagttcaaaatgcgttgagaatgttttcaatatgtcacagcaacttgaaaca |
42622095 |
T |
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| Q |
209 |
ggtccatatagatcattgagttagcagaggtcagtttctgtagtggacaacagttataaatggcaaaaattgttgccaagttttggtatcatgctaatga |
308 |
Q |
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| T |
42622094 |
ggtccatatagatcattgagttagcagagttcagtttctttagtggacaacagttataaatggcaaaaattgttgccaagttttggtatcatgctaatga |
42621995 |
T |
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| Q |
309 |
tgagtacaagacacagacacttcaaattaccccaacctacgtacttccaacgtttcgcccaacatagcctactgattgactttttatcgagtatatcaat |
408 |
Q |
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| T |
42621994 |
tgagtacaagacacagacacttcaaattaccccaacc----tacttccaacgtttcgcccaacatagcctactgattgactttttatcgagtatatcaat |
42621899 |
T |
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| Q |
409 |
ggcaatacctcactttatcacgtggaccattcccaattttaatattcatcaaacccctttggttttttgtgtgaatttattctatacttcatattaatta |
508 |
Q |
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| T |
42621898 |
ggcaatacctcactttatcacgtggaccattcccaattttgatattcatcaaacccctttggttttttgtgtgaatttattctatgcttcatattaatta |
42621799 |
T |
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| Q |
509 |
tacgagtcgaatgccatattcctttagggatgtacct |
545 |
Q |
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| T |
42621798 |
tacgagtcgaatgccatattcctttagggatatacct |
42621762 |
T |
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