View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9820_low_7 (Length: 494)
Name: NF9820_low_7
Description: NF9820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9820_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Original strand, 8898676 - 8899154
Alignment:
| Q |
1 |
taattttaaaaagttattaattaattttaagtttttaacaaataattctaacccaagaagaaaatgagtgaaatttcaatacctcctgtttcatcattat |
100 |
Q |
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| T |
8898676 |
taattttaaaaagttattaattaattttaagtttttaacaa-taattctaaccaaagaagaaaatgagtgaaatttcaatacctcctgtttcatcatttt |
8898774 |
T |
|
| Q |
101 |
gcttagttgatcctctttcaattttgttagactctgcatgcttcaacacatcaatgttgcgtagtttcacagaactcttcatctgacagggcttttgcat |
200 |
Q |
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| T |
8898775 |
gcttagttgatcctctttcaattttgttagactctgcatgcttcaacacatcaatgttgcgtaatttcacagaactcttcatctgacagggcttttgcat |
8898874 |
T |
|
| Q |
201 |
attatccatgtatagattcttagcatccgaaaatggcattgcacatgtgctctgcacacgaattggaaaaacttgtagtttctaactgaaatttaatgaa |
300 |
Q |
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| T |
8898875 |
attatccatgtatagattcttagcatcagaaaatggcattgcacatgtgctctgcacacgaattggaaaaacttgtagtttctaactgaaatttaattaa |
8898974 |
T |
|
| Q |
301 |
gacaaccttatgtagaaataaatttgtccctaagctaagtgactttgaagatgcattgtaagtatgtcttcaaatgttactaagccaagcatagagagaa |
400 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8898975 |
gacaactttatgtagaaataaatttgtccctaagctaagtgactttgaagatgcattgtaagtatgtcttcaaatgttactaagccaagcatagagagaa |
8899074 |
T |
|
| Q |
401 |
aagtgtgaatagaattcc--nnnnnnngcaaaattaaacattaatcacttcacggaacacatcaaggtctaccaaaaatg |
478 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8899075 |
aagtatgaatagaattccaaaaaaagagcaaaattaaacattaatcacttcacggaacacatcaagatctaccaaaaatg |
8899154 |
T |
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