View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9820_low_9 (Length: 417)
Name: NF9820_low_9
Description: NF9820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9820_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 108 - 292
Target Start/End: Original strand, 1762352 - 1762536
Alignment:
| Q |
108 |
gcaacagcatgagctatttcattggttcgcctcctaacaaattatatctttgagtttatgaaatgagagttaacaatgtcttgacaagtactaggaacac |
207 |
Q |
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| T |
1762352 |
gcaagagcatgagctattccattggttcgcctcctaacaaattatatctttgagtttatgaaatgagagttaacaatgtcttgacaagtactaggaacac |
1762451 |
T |
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| Q |
208 |
atccaaattcagtcatgtctattttgttactaagcaataaatctacaattctcttagaatctaactctgaatcaacatgttccaa |
292 |
Q |
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| T |
1762452 |
atccaaattcagtcatgtctattttgttactaagcaataaatctacaattctcttagaatctaactctgaatcaacatgttccaa |
1762536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 294 - 405
Target Start/End: Original strand, 1762711 - 1762822
Alignment:
| Q |
294 |
ttgttcttacgttgtttccacaagctccaaagttgacagttgagcaaggtagtgtcctagaatctcaaaaataatagcagctgcgttagcattattacat |
393 |
Q |
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| T |
1762711 |
ttgttcttacgttgtttccacaagctccaaagttgacagttgagcaaggtagtgtcctagaatctcaaaaataatagcagctgcgttagcattattacat |
1762810 |
T |
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| Q |
394 |
gctacatctgat |
405 |
Q |
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| T |
1762811 |
gctacatatgat |
1762822 |
T |
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