View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9821_high_12 (Length: 292)
Name: NF9821_high_12
Description: NF9821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9821_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 12 - 275
Target Start/End: Original strand, 44897893 - 44898156
Alignment:
| Q |
12 |
catagggattcaatcaataaggcacaattgaaggattattggaaccaaatttgtgaccacaatttcgaatctaggctcagaacattctttgacatgtaat |
111 |
Q |
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| T |
44897893 |
cataggcattcaatcaataaggcacaattgaaggattgttggaaccaaatttgtgaccacgatttcgaatctaggctcagaacattctttgacatgtaat |
44897992 |
T |
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| Q |
112 |
tatttgctatctttttcttcttgtgggtatataaacaaataaaacagagtattcattgaatgcactgaaatattaatttggaatgcagggttgataagga |
211 |
Q |
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| T |
44897993 |
tatttgctatctttttcttcttgtgggtatataaacaaacaaaacagagtattcattgaatgcactgaaatattaatttggaatgcagggttgataagga |
44898092 |
T |
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| Q |
212 |
tgccgatggcatggtcaatgaggaagaaattgaagagattattagccttagtgccagtgcaaac |
275 |
Q |
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| T |
44898093 |
tgccgatggcatggtcaatgaggaagaaattgaagagattattagccttagtgccactgcaaac |
44898156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 44913339 - 44913431
Alignment:
| Q |
18 |
gattcaatcaataaggcacaattgaaggattattggaaccaaatttgtgaccacaatttcgaatctaggctcagaacattctttgacatgtaa |
110 |
Q |
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| T |
44913339 |
gattcaattaataagccacaattgaaggatttctgggaccagatatctgacaatagttttgattctaggctcagaacattctttgacatgtaa |
44913431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 44892837 - 44892879
Alignment:
| Q |
140 |
atataaacaaataaaacagagtattcattgaatgcactgaaat |
182 |
Q |
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| T |
44892837 |
atatacacaaacaaaacagagtattcattgaatgcactgaaat |
44892879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 133
Target Start/End: Original strand, 44883796 - 44883847
Alignment:
| Q |
82 |
ctaggctcagaacattctttgacatgtaattatttgctatctttttcttctt |
133 |
Q |
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| T |
44883796 |
ctaggctcaaaacattctttgacatgtgattatttgctcttttcttcttctt |
44883847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 44883907 - 44883962
Alignment:
| Q |
170 |
aatgcactgaaa---tattaatttggaatgcagggttgataaggatgccgatggca |
222 |
Q |
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| T |
44883907 |
aatgcactgaaagtgtattaatttggaatgcaggattgataaagatgctgatggca |
44883962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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