View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9821_high_2 (Length: 599)

Name: NF9821_high_2
Description: NF9821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9821_high_2
NF9821_high_2
[»] chr2 (18 HSPs)
chr2 (140-355)||(35357217-35357431)
chr2 (396-587)||(29439727-29439919)
chr2 (396-587)||(36809091-36809283)
chr2 (467-587)||(26358824-26358944)
chr2 (366-469)||(26363984-26364087)
chr2 (25-140)||(35357076-35357191)
chr2 (472-587)||(38006019-38006134)
chr2 (146-287)||(35351983-35352126)
chr2 (472-587)||(25873355-25873470)
chr2 (472-587)||(25869987-25870102)
chr2 (506-585)||(10600117-10600196)
chr2 (494-582)||(25821672-25821760)
chr2 (519-583)||(30275472-30275535)
chr2 (517-580)||(25139818-25139881)
chr2 (427-487)||(30275406-30275467)
chr2 (518-570)||(16788557-16788609)
chr2 (19-140)||(35351831-35351951)
chr2 (53-103)||(35346696-35346746)
[»] chr3 (20 HSPs)
chr3 (366-587)||(18645368-18645589)
chr3 (430-587)||(16185346-16185504)
chr3 (396-587)||(10884170-10884362)
chr3 (472-587)||(17532450-17532565)
chr3 (475-580)||(23299289-23299394)
chr3 (472-580)||(6922049-6922157)
chr3 (472-582)||(35411834-35411944)
chr3 (477-579)||(538175-538277)
chr3 (506-585)||(53815126-53815205)
chr3 (477-579)||(10107365-10107467)
chr3 (517-580)||(6445439-6445502)
chr3 (404-488)||(8462244-8462327)
chr3 (517-580)||(52198464-52198527)
chr3 (517-580)||(55032715-55032778)
chr3 (519-587)||(54736631-54736699)
chr3 (517-580)||(28265160-28265223)
chr3 (506-585)||(54460531-54460609)
chr3 (506-573)||(8462325-8462392)
chr3 (427-488)||(54460607-54460669)
chr3 (519-570)||(9392057-9392108)
[»] chr4 (17 HSPs)
chr4 (366-587)||(5721598-5721819)
chr4 (366-587)||(37103893-37104109)
chr4 (385-587)||(9717103-9717305)
chr4 (401-587)||(15431316-15431503)
chr4 (401-587)||(15437930-15438117)
chr4 (488-580)||(18910763-18910855)
chr4 (510-582)||(3798567-3798639)
chr4 (517-587)||(19861065-19861135)
chr4 (494-587)||(5680621-5680714)
chr4 (517-578)||(33410740-33410801)
chr4 (517-582)||(12237511-12237576)
chr4 (517-573)||(27013396-27013452)
chr4 (517-580)||(40617590-40617653)
chr4 (517-587)||(19865421-19865491)
chr4 (518-587)||(53093873-53093941)
chr4 (519-579)||(5669788-5669848)
chr4 (517-579)||(49269895-49269956)
[»] chr5 (14 HSPs)
chr5 (366-580)||(42061645-42061859)
chr5 (472-585)||(28788133-28788246)
chr5 (430-587)||(28441871-28442029)
chr5 (494-587)||(37214918-37215011)
chr5 (504-587)||(32837235-32837318)
chr5 (517-587)||(21336499-21336569)
chr5 (489-587)||(43490945-43491043)
chr5 (517-582)||(21827798-21827863)
chr5 (517-580)||(22937833-22937896)
chr5 (517-574)||(21333483-21333540)
chr5 (519-580)||(31863031-31863092)
chr5 (519-573)||(40916667-40916721)
chr5 (522-587)||(14376638-14376702)
chr5 (509-582)||(39191488-39191561)
[»] chr1 (6 HSPs)
chr1 (396-587)||(2793451-2793643)
chr1 (401-587)||(29643969-29644156)
chr1 (476-587)||(1951082-1951193)
chr1 (488-587)||(42021875-42021974)
chr1 (494-587)||(49499323-49499416)
chr1 (517-587)||(34733042-34733111)
[»] scaffold0080 (1 HSPs)
scaffold0080 (396-587)||(26397-26589)
[»] scaffold0015 (1 HSPs)
scaffold0015 (396-587)||(197383-197575)
[»] chr7 (8 HSPs)
chr7 (430-587)||(10431538-10431696)
chr7 (488-580)||(8276171-8276263)
chr7 (488-580)||(26556669-26556761)
chr7 (404-587)||(2441964-2442125)
chr7 (506-585)||(45287904-45287983)
chr7 (506-585)||(45291240-45291319)
chr7 (506-587)||(4542226-4542306)
chr7 (427-488)||(4542304-4542366)
[»] scaffold0005 (1 HSPs)
scaffold0005 (473-587)||(291115-291229)
[»] chr6 (6 HSPs)
chr6 (404-587)||(34501566-34501728)
chr6 (504-587)||(2371565-2371648)
chr6 (494-579)||(9953196-9953281)
chr6 (517-587)||(5738967-5739037)
chr6 (506-580)||(23379580-23379654)
chr6 (506-580)||(23388919-23388993)
[»] chr8 (13 HSPs)
chr8 (404-582)||(43682483-43682640)
chr8 (473-582)||(20520109-20520217)
chr8 (494-587)||(45156673-45156766)
chr8 (494-580)||(25595439-25595525)
chr8 (517-580)||(17895295-17895358)
chr8 (494-580)||(25592254-25592340)
chr8 (510-579)||(33878009-33878078)
chr8 (505-580)||(25228171-25228246)
chr8 (517-587)||(5540773-5540843)
chr8 (494-580)||(18722065-18722151)
chr8 (517-579)||(10663171-10663233)
chr8 (447-510)||(25229451-25229515)
chr8 (517-573)||(23612745-23612801)
[»] scaffold0270 (3 HSPs)
scaffold0270 (506-581)||(826-901)
scaffold0270 (506-581)||(4186-4261)
scaffold0270 (506-581)||(11316-11391)
[»] scaffold0035 (1 HSPs)
scaffold0035 (517-580)||(61756-61819)
[»] scaffold0381 (1 HSPs)
scaffold0381 (517-573)||(6331-6387)


Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-101; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 140 - 355
Target Start/End: Original strand, 35357217 - 35357431
Alignment:
Q  140 cattcaatttatgagttctctcacctctattgtccaacattcattttttaatccaatttatggcttcaaactcacctcgcacttagcaataacgccaaca 239  Q
    ||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  35357217 cattcgatttatgagttctctcaccactat-gtccaacattcattttttaatccaatttatggcttcaaacttacctcgcacttagcaataacaccaaca 35357315  T
Q  240 acacattaaaactctattaaatagcaaatagcttagagttgataacataactttatatacagttgatagcagataaacaaagacaacgatgtcggaagca 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35357316 acacattaaaactctattaaatagcaaatagcttagagttgataacataactttatatacagttgatagcagataaacaaagacaacgacgtcggaagca 35357415  T
Q  340 attagaacattggcaa 355  Q
    ||||||||||||||||    
T  35357416 attagaacattggcaa 35357431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 396 - 587
Target Start/End: Complemental strand, 29439919 - 29439727
Alignment:
Q  396 ttcttttggatcaaacataagcccatatgacttcttaaatccattgcttcttgacacctccttttttgctctttt-gatcatattttctcttgctttcat 494  Q
    |||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||  | |||||||||||| |||||||||||||||||||| |||    
T  29439919 ttctcttggatcaaacataagcccatatgaattcttaattccattgcttcttgacaccttttattttgctctttttgatcatattttctcttgcttacat 29439820  T
Q  495 ttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctatgct 587  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||| ||||||| ||||    
T  29439819 ttctttccttatgccacatgtccctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatatcgaatgaacttcatcctgtgct 29439727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 396 - 587
Target Start/End: Original strand, 36809091 - 36809283
Alignment:
Q  396 ttcttttggatcaaacataagcccatatgacttcttaaatccattgcttcttgacacctccttttttgctctttt-gatcatattttctcttgctttcat 494  Q
    |||| |||||||||| ||||||||||| |  ||||||| ||||||||||||||||||||| | |||||||||||| ||||||||||| | |||||| |||    
T  36809091 ttctcttggatcaaatataagcccatacgcattcttaattccattgcttcttgacacctcttgttttgctctttttgatcatattttatgttgcttacat 36809190  T
Q  495 ttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctatgct 587  Q
    |||||| ||| ||||| |||| |||||||||||||| | ||||||||||||||||||| |||||||||||||||||||| |||||||| ||||    
T  36809191 ttctttccttgtgccaaatgttcctaaaatcgtgtcacaaaatagccatcgtgacacgttttaaccaatgtcgaatgaatctcatcctgtgct 36809283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 467 - 587
Target Start/End: Complemental strand, 26358944 - 26358824
Alignment:
Q  467 ttttgatcatattttctcttgctttcatttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtc 566  Q
    |||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  26358944 ttttgatcatattttctcctgctttcatttctttccttgtgccacatgtccctaaaatcgtgtcacgaaatagccatcgtgacacgatttaaccaatgcc 26358845  T
Q  567 gaatgaacctcatcctatgct 587  Q
    |||||||||||||||| ||||    
T  26358844 gaatgaacctcatcctgtgct 26358824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 366 - 469
Target Start/End: Complemental strand, 26364087 - 26363984
Alignment:
Q  366 gttatcaagtcattgtatgttaccttttctttcttttggatcaaacataagcccatatgacttcttaaatccattgcttcttgacacctccttttttgct 465  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  26364087 gttatcaagtcattgcatgttaccttttctttcttttggatcaaacataagcccatatgacttcttaaatctattgcttcttgacacctcctgttttgct 26363988  T
Q  466 cttt 469  Q
    ||||    
T  26363987 cttt 26363984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 35357076 - 35357191
Alignment:
Q  25 ggggtaaaaactctctaacttttctatcaagagtggagttcggaggataatccgcatttggatcaaattatttcattcatttggattttttatcgaacca 124  Q
    ||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||| ||||||| ||| ||||| ||    
T  35357076 ggggtaaaaactctcaaacttttctatcaagagtagagttctgaggataatccgcatttggaccaaattatttcattcacttggattctttgtcgaatca 35357175  T
Q  125 tataattcagagacac 140  Q
    ||||||||||||||||    
T  35357176 tataattcagagacac 35357191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 472 - 587
Target Start/End: Original strand, 38006019 - 38006134
Alignment:
Q  472 atcatattttctcttgctttcatttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatg 571  Q
    ||||||||||||||||||||||||| ||| ||| |||||||||| ||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  38006019 atcatattttctcttgctttcatttatttccttgtgccacatgttcctgaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatg 38006118  T
Q  572 aacctcatcctatgct 587  Q
    ||||||||||| ||||    
T  38006119 aacctcatcctgtgct 38006134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 146 - 287
Target Start/End: Original strand, 35351983 - 35352126
Alignment:
Q  146 atttatgagttctctcacctctattgtccaacattcattttttaa--tccaatttatggcttcaaactcacctcgcacttagcaataacgccaacaacac 243  Q
    |||||||  |||||||||||| ||||| |||||||||||||||    || ||||||| |||| |||||||||||||  ||||||||| ||||||||||||    
T  35351983 atttatggattctctcacctcaattgttcaacattcattttttttgttcaaatttattgctttaaactcacctcgctattagcaataccgccaacaacac 35352082  T
Q  244 attaaaactctattaaatagcaaatagcttagagttgataacat 287  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  35352083 attaaaactctattaaatagtaaatagcttagagttgataacat 35352126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 472 - 587
Target Start/End: Complemental strand, 25873470 - 25873355
Alignment:
Q  472 atcatattttctcttgctttcatttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatg 571  Q
    ||||||||||||||||||||||||| |||  || | |||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  25873470 atcatattttctcttgctttcatttatttcattgtaccacatgttcctaaaatcgtgtcacgaaatagccatcgtgacacggtttaaccaatgtcgaatg 25873371  T
Q  572 aacctcatcctatgct 587  Q
    ||||||||||| ||||    
T  25873370 aacctcatcctgtgct 25873355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 472 - 587
Target Start/End: Complemental strand, 25870102 - 25869987
Alignment:
Q  472 atcatattttctcttgctttcatttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatg 571  Q
    ||||||||||||||||||||||| | ||| ||| |||||||||| ||||||||||| || ||||||||||||||||||||| ||||| ||||||||||||    
T  25870102 atcatattttctcttgctttcatctatttccttgtgccacatgttcctaaaatcgtatcacgaaatagccatcgtgacacgttttaatcaatgtcgaatg 25870003  T
Q  572 aacctcatcctatgct 587  Q
    ||| ||||||| ||||    
T  25870002 aacttcatcctgtgct 25869987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 506 - 585
Target Start/End: Complemental strand, 10600196 - 10600117
Alignment:
Q  506 tgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctatg 585  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10600196 tgccacatgttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatg 10600117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 494 - 582
Target Start/End: Original strand, 25821672 - 25821760
Alignment:
Q  494 tttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcct 582  Q
    ||||||| ||| |||||||||| |||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  25821672 tttctttccttgtgccacatgttcctaaaatcgtgtcacgaaatagccatcgtgacacattttaaccaatgtcgaatgaacctcatcct 25821760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 519 - 583
Target Start/End: Original strand, 30275472 - 30275535
Alignment:
Q  519 taaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatccta 583  Q
    |||||||||||| ||||||| ||||||||||||| |||||||||||||||||||| |||||||||    
T  30275472 taaaatcgtgtcacgaaataaccatcgtgacacgttttaaccaatgtcgaatgaa-ctcatccta 30275535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 517 - 580
Target Start/End: Original strand, 25139818 - 25139881
Alignment:
Q  517 cctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatc 580  Q
    |||||||||||||| |||||||||||| |||||||| |||||| |||||| |||||||||||||    
T  25139818 cctaaaatcgtgtcacgaaatagccattgtgacacgttttaactaatgtctaatgaacctcatc 25139881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 427 - 487
Target Start/End: Original strand, 30275406 - 30275467
Alignment:
Q  427 ttcttaaatccattgcttcttgacacctccttttttgctc-ttttgatcatattttctcttg 487  Q
    ||||||| |||||| |||||||||||||||| |||||||| |||||||||||||||||||||    
T  30275406 ttcttaattccattacttcttgacacctcctcttttgctctttttgatcatattttctcttg 30275467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 518 - 570
Target Start/End: Complemental strand, 16788609 - 16788557
Alignment:
Q  518 ctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaat 570  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||| ||||||    
T  16788609 ctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatatcgaat 16788557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 35351831 - 35351951
Alignment:
Q  19 attcaaggggtaaaaactctctaacttttctatcaagagtggagttcggaggat--aatccgcatttggatcaaattatttcattcatttggatttttta 116  Q
    |||||||||  |||||||||| ||||| |   ||||||||||||||||||||||   ||||| |||||||  ||| |||||||||||||||     ||||    
T  35351831 attcaagggacaaaaactctcaaacttctgggtcaagagtggagttcggaggattatatccgtatttggacaaaagtatttcattcatttg---ccttta 35351927  T
Q  117 tcgaaccatataattcagagacac 140  Q
    ||||||||||||||||| ||||||    
T  35351928 tcgaaccatataattcaaagacac 35351951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 35346696 - 35346746
Alignment:
Q  53 aagagtggagttcggaggataatccgcatttggatcaaattatttcattca 103  Q
    ||||| |||||||||||||| ||||||||||||| ||||| |||| |||||    
T  35346696 aagagcggagttcggaggattatccgcatttggaccaaatcattttattca 35346746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 182; Significance: 4e-98; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 366 - 587
Target Start/End: Original strand, 18645368 - 18645589
Alignment:
Q  366 gttatcaagtcattgtatgttaccttttctttcttttggatcaaacataagcccatatgacttcttaaatccattgcttcttgacacctccttttttgct 465  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  18645368 gttagcaagtcattgcatgttaccttttctttcttttggatcaaacataagcccatatgacttcttaaatccattgcttcttgaaacctcctgttttgct 18645467  T
Q  466 cttttgatcatattttctcttgctttcatttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgt 565  Q
    ||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  18645468 ctttttatcatattttctcttgctttcatttctttccttgtgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgatttaaccaatgt 18645567  T
Q  566 cgaatgaacctcatcctatgct 587  Q
    ||||||||||||||||| ||||    
T  18645568 cgaatgaacctcatcctgtgct 18645589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 430 - 587
Target Start/End: Original strand, 16185346 - 16185504
Alignment:
Q  430 ttaaatccattgcttcttgacacctccttttttgctctttt-gatcatattttctcttgctttcatttctttacttatgccacatgtccctaaaatcgtg 528  Q
    ||||||||||||||||||||||||| || |||||||||||| || ||||||||||||||| || |||||||| ||| |||||||||||||||||||||||    
T  16185346 ttaaatccattgcttcttgacaccttctcttttgctctttttgaccatattttctcttgcgtttatttctttccttgtgccacatgtccctaaaatcgtg 16185445  T
Q  529 tcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctatgct 587  Q
    || ||||||||||||||||||||| |||| |||||||||| ||||||||||||| ||||    
T  16185446 tcacgaaatagccatcgtgacacgttttagccaatgtcgagtgaacctcatcctgtgct 16185504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 396 - 587
Target Start/End: Complemental strand, 10884362 - 10884170
Alignment:
Q  396 ttcttttggatcaaacataagcccatatgacttcttaaatccattgcttcttgacacctccttttttgctctttt-gatcatattttctcttgctttcat 494  Q
    |||| ||||||||||||||||   |||||| ||||||| || |||||||||||||||||  | |||||||||||| ||| |||||||||||||||| |||    
T  10884362 ttctcttggatcaaacataagtttatatgaattcttaattctattgcttcttgacaccttttattttgctctttttgattatattttctcttgcttacat 10884263  T
Q  495 ttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctatgct 587  Q
    |||||| ||| ||||||||||||||||||||||||| |||||| |||||| ||||||| ||||| ||||||||||||||||| ||||| ||||    
T  10884262 ttctttccttgtgccacatgtccctaaaatcgtgtcacgaaatggccatcatgacacgttttaatcaatgtcgaatgaacctaatcctgtgct 10884170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 472 - 587
Target Start/End: Original strand, 17532450 - 17532565
Alignment:
Q  472 atcatattttctcttgctttcatttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatg 571  Q
    ||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||| |||||||| |||||||||||| |||||||||| |||||||    
T  17532450 atcatattttctcttgctttcatttctttccttgtgccacatgttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatatcgaatg 17532549  T
Q  572 aacctcatcctatgct 587  Q
    ||||||||||| ||||    
T  17532550 aacctcatcctgtgct 17532565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 475 - 580
Target Start/End: Original strand, 23299289 - 23299394
Alignment:
Q  475 atattttctcttgctttcatttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaac 574  Q
    |||||||||||||||||||||| ||| ||| |||||||||| |||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||    
T  23299289 atattttctcttgctttcatttatttccttgtgccacatgttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaatcaatgtcgaatgaac 23299388  T
Q  575 ctcatc 580  Q
    ||||||    
T  23299389 ctcatc 23299394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 472 - 580
Target Start/End: Complemental strand, 6922157 - 6922049
Alignment:
Q  472 atcatattttctcttgctttcatttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatg 571  Q
    ||||||||||||||||||||||||| ||| ||| |||||||||| |||||||||||||| ||||||||||||||||||||| ||| |||||||| |||||    
T  6922157 atcatattttctcttgctttcatttatttccttgtgccacatgttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttcaccaatgttgaatg 6922058  T
Q  572 aacctcatc 580  Q
    |||||||||    
T  6922057 aacctcatc 6922049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 472 - 582
Target Start/End: Complemental strand, 35411944 - 35411834
Alignment:
Q  472 atcatattttctcttgctttcatttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatg 571  Q
    |||||||||| |||||||||  ||||||| ||| |||||||||| |||||||||||||| ||||||||||||||||||||  ||||||||||||||||||    
T  35411944 atcatattttatcttgcttttgtttctttccttgtgccacatgttcctaaaatcgtgtcacgaaatagccatcgtgacacattttaaccaatgtcgaatg 35411845  T
Q  572 aacctcatcct 582  Q
    |||||||||||    
T  35411844 aacctcatcct 35411834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 477 - 579
Target Start/End: Complemental strand, 538277 - 538175
Alignment:
Q  477 attttctcttgctttcatttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacct 576  Q
    |||||||||||||||||||||||| ||| ||||| ||||||||||||||||||| ||||||| ||||||| ||||| ||||||||||||||||||||| |    
T  538277 attttctcttgctttcatttctttccttgtgccatatgtccctaaaatcgtgtcacgaaataaccatcgtaacacgttttaaccaatgtcgaatgaactt 538178  T
Q  577 cat 579  Q
    |||    
T  538177 cat 538175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 506 - 585
Target Start/End: Complemental strand, 53815205 - 53815126
Alignment:
Q  506 tgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctatg 585  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  53815205 tgccacatgttcctaaaatcgtgtcacgaaatagccatcgtgacacattttaaccaatgtcgaatgaacctcatcctatg 53815126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 477 - 579
Target Start/End: Original strand, 10107365 - 10107467
Alignment:
Q  477 attttctcttgctttcatttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacct 576  Q
    |||||||||||||||||||||||| ||| ||||| ||||||||||||||||||| ||||||| ||||||| || || ||||||||||||| ||| ||| |    
T  10107365 attttctcttgctttcatttctttccttgtgccatatgtccctaaaatcgtgtcacgaaataaccatcgtaacgcgttttaaccaatgtcaaattaactt 10107464  T
Q  577 cat 579  Q
    |||    
T  10107465 cat 10107467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 517 - 580
Target Start/End: Original strand, 6445439 - 6445502
Alignment:
Q  517 cctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatc 580  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6445439 cctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatc 6445502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 404 - 488
Target Start/End: Original strand, 8462244 - 8462327
Alignment:
Q  404 gatcaaacataagcccatatgacttcttaaatccattgcttcttgacacctccttttttgctc-ttttgatcatattttctcttgc 488  Q
    |||||||||||||||||||  | |||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||    
T  8462244 gatcaaacataagcccata--aattcttaaatccattgcttcttgacacatcctgttttgctctttttgatcatattttctcttgc 8462327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 517 - 580
Target Start/End: Complemental strand, 52198527 - 52198464
Alignment:
Q  517 cctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatc 580  Q
    |||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||    
T  52198527 cctaaaatcgtgtcacgaaatagccatcgtgacacattttaaccaatgtcgaatgaacctcatc 52198464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 517 - 580
Target Start/End: Original strand, 55032715 - 55032778
Alignment:
Q  517 cctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatc 580  Q
    |||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||    
T  55032715 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatc 55032778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 519 - 587
Target Start/End: Original strand, 54736631 - 54736699
Alignment:
Q  519 taaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctatgct 587  Q
    |||||||||||| |||||||| |||||||||||| ||||||||||  ||||||||||||||||||||||    
T  54736631 taaaatcgtgtcacgaaatagacatcgtgacacgttttaaccaataccgaatgaacctcatcctatgct 54736699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 517 - 580
Target Start/End: Complemental strand, 28265223 - 28265160
Alignment:
Q  517 cctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatc 580  Q
    |||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||| |||||    
T  28265223 cctaaaatcgtgtcacgaaatagccaccgtgacacgttttaaccaatgtcgaatgaacttcatc 28265160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 506 - 585
Target Start/End: Complemental strand, 54460609 - 54460531
Alignment:
Q  506 tgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctatg 585  Q
    |||||||||| | |||||||||||| ||||||||||||||||||||| |||||||||| | ||||||| |||||||||||    
T  54460609 tgccacatgttcttaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatcttgaatgaa-ctcatcctatg 54460531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 506 - 573
Target Start/End: Original strand, 8462325 - 8462392
Alignment:
Q  506 tgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaa 573  Q
    |||||| ||||| |||||||||||| ||||||||||||||||| ||| ||||| ||||||||||||||    
T  8462325 tgccacgtgtccttaaaatcgtgtcacgaaatagccatcgtgatacgttttaatcaatgtcgaatgaa 8462392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 427 - 488
Target Start/End: Complemental strand, 54460669 - 54460607
Alignment:
Q  427 ttcttaaatccattgcttcttgacacctccttttttgctc-ttttgatcatattttctcttgc 488  Q
    ||||||| |||||| |||||||||||||||| |||||||| ||||||||||||||||||||||    
T  54460669 ttcttaattccattacttcttgacacctcctgttttgctctttttgatcatattttctcttgc 54460607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 519 - 570
Target Start/End: Complemental strand, 9392108 - 9392057
Alignment:
Q  519 taaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaat 570  Q
    |||||||||||| ||||||||||||||||||||| |||| ||||||||||||    
T  9392108 taaaatcgtgtcacgaaatagccatcgtgacacgttttagccaatgtcgaat 9392057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 178; Significance: 1e-95; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 366 - 587
Target Start/End: Original strand, 5721598 - 5721819
Alignment:
Q  366 gttatcaagtcattgtatgttaccttttctttcttttggatcaaacataagcccatatgacttcttaaatccattgcttcttgacacctccttttttgct 465  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||    
T  5721598 gttagcaagtcattgcatgttaccttttctttcttttggatcaaacataagcccatatgacttcttaaatccattgcttcctgaaacctcctgttttgct 5721697  T
Q  466 cttttgatcatattttctcttgctttcatttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgt 565  Q
    ||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  5721698 ctttttatcatattttctcttgctttcatttctttccttgtgccacatgtccctaaaatcgtgtcacgaaatagctatcgtgacacgatttaaccaatgt 5721797  T
Q  566 cgaatgaacctcatcctatgct 587  Q
    ||||||||||||||||| ||||    
T  5721798 cgaatgaacctcatcctgtgct 5721819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 366 - 587
Target Start/End: Original strand, 37103893 - 37104109
Alignment:
Q  366 gttatcaagtcattgtatgttaccttttctttcttttggatcaaacataagcccatatgacttcttaaatccattgcttcttgacacctccttttttgct 465  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  37103893 gttatcaagtcattgcatgttaccttttctttcttttggatcaaacataagcccatatgacttcttaaatccattgcttcttgacag------ttttgct 37103986  T
Q  466 ctttt-gatcatattttctcttgctttcatttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatg 564  Q
    ||||| ||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37103987 ctttttgatcatattttcttttgctttcatttctttccttgtgccacatgtccctaaaatcgtgtcacgaaatagccatcgtgacacgatttaaccaatg 37104086  T
Q  565 tcgaatgaacctcatcctatgct 587  Q
    |||||||||||||||||| ||||    
T  37104087 tcgaatgaacctcatcctgtgct 37104109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 385 - 587
Target Start/End: Complemental strand, 9717305 - 9717103
Alignment:
Q  385 ttaccttttctttcttttggatcaaacataagcccatatgacttcttaaatccattgcttcttgacacctccttttttgctctttt-gatcatattttct 483  Q
    |||||||||||||||||||||||||  ||||||||||||||| |||||| ||||||||||||| ||||||||| |||||||||||| ||||||||||| |    
T  9717305 ttaccttttctttcttttggatcaat-ataagcccatatgacatcttaattccattgcttcttaacacctcctgttttgctctttttgatcatattttat 9717207  T
Q  484 cttgctttcatttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatccta 583  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||     
T  9717206 cttgctttcatttctttccttgtgccacatgtccctaaaatcgtgtcacgaaagagccatcgtgacacgatttaaccaatgtcgaacgaacctcatcctg 9717107  T
Q  584 tgct 587  Q
    ||||    
T  9717106 tgct 9717103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 401 - 587
Target Start/End: Complemental strand, 15431503 - 15431316
Alignment:
Q  401 ttggatcaaacataagcccatatgacttcttaaatccattgcttcttgacacctccttttttgctctttt-gatcatattttctcttgctttcatttctt 499  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||| || |||||||    
T  15431503 ttggatcaaacataagcccatataaattcttaaatccattgcttcttgacacctcctgttttgctctttttgatcctattttctcttgcgtttatttctt 15431404  T
Q  500 tacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctatgct 587  Q
    | ||| |||||||||| |||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||    
T  15431403 tccttgtgccacatgttcctaaaatcgtgtcacgaaatagccatcgtgacacattttaaccaatgtcgaatgaacctcatcctgtgct 15431316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 401 - 587
Target Start/End: Complemental strand, 15438117 - 15437930
Alignment:
Q  401 ttggatcaaacataagcccatatgacttcttaaatccattgcttcttgacacctccttttttgctctttt-gatcatattttctcttgctttcatttctt 499  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||| || |||||||    
T  15438117 ttggatcaaacataagcccatataaattcttaaatccattgcttcttgacacctcctgttttgctctttttgatcctattttctcttgcgtttatttctt 15438018  T
Q  500 tacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctatgct 587  Q
    | ||| |||||||||| |||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||    
T  15438017 tccttgtgccacatgttcctaaaatcgtgtcacgaaatagccatcgtgacacattttaaccaatgtcgaatgaacctcatcctgtgct 15437930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 488 - 580
Target Start/End: Complemental strand, 18910855 - 18910763
Alignment:
Q  488 ctttcatttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatc 580  Q
    ||||||||||||| ||| |||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||    
T  18910855 ctttcatttctttccttgtgccacatgtccctaaaatcgtgtcatgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatc 18910763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 510 - 582
Target Start/End: Original strand, 3798567 - 3798639
Alignment:
Q  510 acatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcct 582  Q
    |||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3798567 acatgttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatcct 3798639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 517 - 587
Target Start/End: Original strand, 19861065 - 19861135
Alignment:
Q  517 cctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctatgct 587  Q
    |||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||    
T  19861065 cctaaaatcgtgtcacgaaatagccatcttgacacgttttaaccaatgtcgaatgaacctcatcctgtgct 19861135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 494 - 587
Target Start/End: Complemental strand, 5680714 - 5680621
Alignment:
Q  494 tttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctatgct 587  Q
    ||||||| ||| |||||||||| ||||||||||||||  |||||||| |  |||||||| |||||||||||||||||||||||||| |||||||    
T  5680714 tttcttttcttgtgccacatgttcctaaaatcgtgtcaagaaatagcaaaagtgacacgttttaaccaatgtcgaatgaacctcattctatgct 5680621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 517 - 578
Target Start/End: Original strand, 33410740 - 33410801
Alignment:
Q  517 cctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctca 578  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  33410740 cctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctca 33410801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 517 - 582
Target Start/End: Complemental strand, 12237576 - 12237511
Alignment:
Q  517 cctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcct 582  Q
    |||||||||||||| |||||||||||||||||||   |||||||||||||||||||||||||||||    
T  12237576 cctaaaatcgtgtcacgaaatagccatcgtgacatattttaaccaatgtcgaatgaacctcatcct 12237511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 517 - 573
Target Start/End: Complemental strand, 27013452 - 27013396
Alignment:
Q  517 cctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaa 573  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  27013452 cctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaa 27013396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 517 - 580
Target Start/End: Original strand, 40617590 - 40617653
Alignment:
Q  517 cctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatc 580  Q
    |||||||||||||| |||||||||||||||||| || ||||| |||||||||||||||||||||    
T  40617590 cctaaaatcgtgtcacgaaatagccatcgtgactcgttttaatcaatgtcgaatgaacctcatc 40617653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 517 - 587
Target Start/End: Original strand, 19865421 - 19865491
Alignment:
Q  517 cctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctatgct 587  Q
    |||||||||||||| ||||||||||||| |  |||| ||||||||||||||||||||||||||||| ||||    
T  19865421 cctaaaatcgtgtcacgaaatagccatcttagcacgttttaaccaatgtcgaatgaacctcatcctgtgct 19865491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 518 - 587
Target Start/End: Complemental strand, 53093941 - 53093873
Alignment:
Q  518 ctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctatgct 587  Q
    ||||||||||||| ||||||||||||||||||||| ||  ||||||||||||||||||||||||| ||||    
T  53093941 ctaaaatcgtgtcacgaaatagccatcgtgacacg-ttctaccaatgtcgaatgaacctcatcctgtgct 53093873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 519 - 579
Target Start/End: Complemental strand, 5669848 - 5669788
Alignment:
Q  519 taaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcat 579  Q
    |||||||||||| ||||||||||| ||||||||| ||||||||||||||||| ||||||||    
T  5669848 taaaatcgtgtcacgaaatagccaccgtgacacgttttaaccaatgtcgaataaacctcat 5669788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 517 - 579
Target Start/End: Complemental strand, 49269956 - 49269895
Alignment:
Q  517 cctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcat 579  Q
    |||||||||||||| ||||||||| || |||||||| |||||||||||||||||||| |||||    
T  49269956 cctaaaatcgtgtcacgaaatagc-attgtgacacgttttaaccaatgtcgaatgaatctcat 49269895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 175; Significance: 6e-94; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 366 - 580
Target Start/End: Complemental strand, 42061859 - 42061645
Alignment:
Q  366 gttatcaagtcattgtatgttaccttttctttcttttggatcaaacataagcccatatgacttcttaaatccattgcttcttgacacctccttttttgct 465  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  42061859 gttagcaagtcattgcatgttaccttttctttcttttggatcaaacataagcccatatgacttcttaaatccattgcttcttgaaacctcctgttttgct 42061760  T
Q  466 cttttgatcatattttctcttgctttcatttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgt 565  Q
    ||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||    
T  42061759 ctttttatcatattttctcttgctttcatttctttccttgtgccacatgtccctaaaatcatgtcacgaaatagctatcgtgacacgatttaaccaatgt 42061660  T
Q  566 cgaatgaacctcatc 580  Q
    |||||||||||||||    
T  42061659 cgaatgaacctcatc 42061645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 472 - 585
Target Start/End: Original strand, 28788133 - 28788246
Alignment:
Q  472 atcatattttctcttgctttcatttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatg 571  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||  ||||||||||||| ||||||||||||||||||||| |||||||||||||||||     
T  28788133 atcatattttctcttgctttcatttctttccttgtgccacatgtttctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaata 28788232  T
Q  572 aacctcatcctatg 585  Q
    ||||||||||||||    
T  28788233 aacctcatcctatg 28788246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 430 - 587
Target Start/End: Original strand, 28441871 - 28442029
Alignment:
Q  430 ttaaatccattgcttcttgacacctccttttttgctcttttgatc-atattttctcttgctttcatttctttacttatgccacatgtccctaaaatcgtg 528  Q
    |||||||||||||||||||| |||| || |||||||||||| | | |||||||||||||| || |||||||| ||| |||||||||||| ||||||||||    
T  28441871 ttaaatccattgcttcttgataccttctgttttgctctttttaaccatattttctcttgcgtttatttctttccttgtgccacatgtccttaaaatcgtg 28441970  T
Q  529 tcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctatgct 587  Q
    || ||||||||||||| ||||||| |||| ||||||| || ||||||||||||| ||||    
T  28441971 tcacgaaatagccatcatgacacgttttagccaatgttgagtgaacctcatcctgtgct 28442029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 494 - 587
Target Start/End: Complemental strand, 37215011 - 37214918
Alignment:
Q  494 tttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctatgct 587  Q
    ||||||| ||| |||||||||| |||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||    
T  37215011 tttctttccttgtgccacatgttcctaaaatcgtgtcacgaaatagccatcatgacacgttttaaccaatgtcgaatgaacctcatcctgtgct 37214918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 504 - 587
Target Start/End: Complemental strand, 32837318 - 32837235
Alignment:
Q  504 tatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctatgct 587  Q
    |||| |||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||| |||||||||||||    
T  32837318 tatgtcacatgtccctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaaactcatcctatgct 32837235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 517 - 587
Target Start/End: Original strand, 21336499 - 21336569
Alignment:
Q  517 cctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctatgct 587  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  21336499 cctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatcctgtgct 21336569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 489 - 587
Target Start/End: Complemental strand, 43491043 - 43490945
Alignment:
Q  489 tttcatttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctatgct 587  Q
    |||||||||||| ||| ||||||||||||||||||||||||  |||||||| |||||||| ||| ||||||||||| | ||||||||||||||| ||||    
T  43491043 tttcatttctttccttgtgccacatgtccctaaaatcgtgttacgaaatagacatcgtgatacgttttaaccaatgccaaatgaacctcatcctgtgct 43490945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 517 - 582
Target Start/End: Original strand, 21827798 - 21827863
Alignment:
Q  517 cctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcct 582  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21827798 cctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatcct 21827863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 517 - 580
Target Start/End: Original strand, 22937833 - 22937896
Alignment:
Q  517 cctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatc 580  Q
    |||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  22937833 cctaaaatcgtgtcacgaaatagccatcgtgacacgttttaatcaatgtcgaatgaacctcatc 22937896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 517 - 574
Target Start/End: Original strand, 21333483 - 21333540
Alignment:
Q  517 cctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaac 574  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  21333483 cctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaac 21333540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 519 - 580
Target Start/End: Complemental strand, 31863092 - 31863031
Alignment:
Q  519 taaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatc 580  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  31863092 taaaatcgtgtcacgaaatagccatcgtgacacgatttaaacaatgtcgaatgaacttcatc 31863031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 519 - 573
Target Start/End: Original strand, 40916667 - 40916721
Alignment:
Q  519 taaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaa 573  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  40916667 taaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaa 40916721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 522 - 587
Target Start/End: Original strand, 14376638 - 14376702
Alignment:
Q  522 aatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctatgct 587  Q
    ||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||    
T  14376638 aatcgtgtcacgaaatagccatcgtgacacgttttaa-caatgtcgaatgaacctcatcctgtgct 14376702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 509 - 582
Target Start/End: Complemental strand, 39191561 - 39191488
Alignment:
Q  509 cacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcct 582  Q
    ||||||| | |||||||||||  |||||||| ||| |||||||| |||||||||| |||||| |||||||||||    
T  39191561 cacatgttcttaaaatcgtgttacgaaatagacattgtgacacgttttaaccaatatcgaataaacctcatcct 39191488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 137; Significance: 3e-71; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 396 - 587
Target Start/End: Complemental strand, 2793643 - 2793451
Alignment:
Q  396 ttcttttggatcaaacataagcccatatgacttcttaaatccattgcttcttgacacctccttttttgctctttt-gatcatattttctcttgctttcat 494  Q
    |||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||  | |||||||||||| |||||||||||||||||||| |||    
T  2793643 ttctcttggatcaaacataagcccatatgaattcttaattccattgcttcttgacaccttttattttgctctttttgatcatattttctcttgcttacat 2793544  T
Q  495 ttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctatgct 587  Q
    |||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  2793543 ttctttccttgtgccacatgtccctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatcctgtgct 2793451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 401 - 587
Target Start/End: Original strand, 29643969 - 29644156
Alignment:
Q  401 ttggatcaaacataagcccatatgacttcttaaatccattgcttcttgacacctccttttttgctctttt-gatcatattttctcttgctttcatttctt 499  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||| || |||||||    
T  29643969 ttggatcaaacataagcccatatgaattcttaaatccattgcttcttgacaccttctgttttgctctttttgatcatattttctcttgcgtttatttctt 29644068  T
Q  500 tacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctatgct 587  Q
    | ||| |||||||||||||||||||| |||| ||||||||||||||| ||||| |||| ||||||||||||||| |||||||| ||||    
T  29644069 tccttgtgccacatgtccctaaaatcatgtcacgaaatagccatcgtaacacgttttagccaatgtcgaatgaatctcatcctgtgct 29644156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 476 - 587
Target Start/End: Original strand, 1951082 - 1951193
Alignment:
Q  476 tattttctcttgctttcatttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacc 575  Q
    ||||||||||||||||||||| ||| ||| |||||||||| |||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||    
T  1951082 tattttctcttgctttcatttatttccttgtgccacatgttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccactgtcgaatgaacc 1951181  T
Q  576 tcatcctatgct 587  Q
    ||||||||||||    
T  1951182 tcatcctatgct 1951193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 488 - 587
Target Start/End: Complemental strand, 42021974 - 42021875
Alignment:
Q  488 ctttcatttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctatgct 587  Q
    ||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||    
T  42021974 ctttcatttctttccttgtgccacatgtccctaaaatcgtgtcacgaaatagccatcgtaacacgttttaaccaatgtcgaatgaacctcatccgatgct 42021875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 494 - 587
Target Start/End: Original strand, 49499323 - 49499416
Alignment:
Q  494 tttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctatgct 587  Q
    ||||||| ||| |||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  49499323 tttctttccttgtgccacatgttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatcatatgct 49499416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 517 - 587
Target Start/End: Original strand, 34733042 - 34733111
Alignment:
Q  517 cctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctatgct 587  Q
    ||||||||| |||| |||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||    
T  34733042 cctaaaatcatgtcacgaaatagccatcgtgacac-attttaccaatgtcgaatgaacctcatcctgtgct 34733111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 125; Significance: 4e-64; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 396 - 587
Target Start/End: Complemental strand, 26589 - 26397
Alignment:
Q  396 ttcttttggatcaaacataagcccatatgacttcttaaatccattgcttcttgacacctccttttttgctctttt-gatcatattttctcttgctttcat 494  Q
    |||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||  | |||||||||||| |||||||||||||||||||| |||    
T  26589 ttctcttggatcaaacataagcccatatgaattcttaattccattgcttcttgacaccttttgttttgctctttttgatcatattttctcttgcttacat 26490  T
Q  495 ttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctatgct 587  Q
    |||||| ||| |||| ||||||||||||| |||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  26489 ttctttccttgtgccccatgtccctaaaaccgtgttacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatcctgtgct 26397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 125; Significance: 4e-64; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 396 - 587
Target Start/End: Complemental strand, 197575 - 197383
Alignment:
Q  396 ttcttttggatcaaacataagcccatatgacttcttaaatccattgcttcttgacacctccttttttgctctttt-gatcatattttctcttgctttcat 494  Q
    |||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||  | |||||||||||| |||||||||||||||||||| |||    
T  197575 ttctcttggatcaaacataagcccatatgaattcttaattccattgcttcttgacaccttttgttttgctctttttgatcatattttctcttgcttacat 197476  T
Q  495 ttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctatgct 587  Q
    |||||| ||| |||||||||||||||||||||||||  |||||||||||||||||||  ||||| ||||||||||||||||||||||| ||||    
T  197475 ttctttccttgtgccacatgtccctaaaatcgtgtcatgaaatagccatcgtgacacattttaatcaatgtcgaatgaacctcatcctgtgct 197383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 1e-48; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 430 - 587
Target Start/End: Complemental strand, 10431696 - 10431538
Alignment:
Q  430 ttaaatccattgcttcttgacacctccttttttgctcttttgatc-atattttctcttgctttcatttctttacttatgccacatgtccctaaaatcgtg 528  Q
    ||||||||||||||||||||||||| || |||||||||||| | | |||||||||||||| || |||||||| ||| |||||||||||||||||||||||    
T  10431696 ttaaatccattgcttcttgacaccttctattttgctctttttaaccatattttctcttgcgtttatttctttccttgtgccacatgtccctaaaatcgtg 10431597  T
Q  529 tcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctatgct 587  Q
    || ||||||||||||||||||||| |||| |||||||||| ||||||||||||| ||||    
T  10431596 tcacgaaatagccatcgtgacacgttttagccaatgtcgagtgaacctcatcctgtgct 10431538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 488 - 580
Target Start/End: Complemental strand, 8276263 - 8276171
Alignment:
Q  488 ctttcatttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatc 580  Q
    ||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8276263 ctttcatttctttccttgtgccacatgtccctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatc 8276171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 488 - 580
Target Start/End: Complemental strand, 26556761 - 26556669
Alignment:
Q  488 ctttcatttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatc 580  Q
    ||||||||||||| ||| |||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||| |||||||||    
T  26556761 ctttcatttctttccttgtgccacatgtccctaaaatcgtgtcatgaaatagccatcgtgacacgttttaaccaatgtcgaataaacctcatc 26556669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 404 - 587
Target Start/End: Original strand, 2441964 - 2442125
Alignment:
Q  404 gatcaaacataagcccatatgacttcttaaatccattgcttcttgacacctccttttttgctc-ttttgatcatattttctcttgctttcatttctttac 502  Q
    |||||||||||||||||||  | ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||                     
T  2441964 gatcaaacataagcccata--aattcttaaatccattgcttcttgacacctcctgttttgctctttttgatcatattttctct----------------- 2442044  T
Q  503 ttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctatgct 587  Q
       ||||||||||||||||||||||||| ||||||||||||||||| ||| |||| |||||||||| |||| |||||||||||||    
T  2442045 ---tgccacatgtccctaaaatcgtgtcacgaaatagccatcgtgatacgttttagccaatgtcgagtgaa-ctcatcctatgct 2442125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 506 - 585
Target Start/End: Original strand, 45287904 - 45287983
Alignment:
Q  506 tgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctatg 585  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  45287904 tgccacatgttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatcttatg 45287983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 506 - 585
Target Start/End: Original strand, 45291240 - 45291319
Alignment:
Q  506 tgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctatg 585  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  45291240 tgccacatgttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcattctatg 45291319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 506 - 587
Target Start/End: Complemental strand, 4542306 - 4542226
Alignment:
Q  506 tgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctatgct 587  Q
    |||||||||| |||||||| ||||| ||||||| ||||||||||| | |||||||||||||||||||| |||||||||||||    
T  4542306 tgccacatgttcctaaaattgtgtcacgaaatatccatcgtgacaagttttaaccaatgtcgaatgaa-ctcatcctatgct 4542226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 488
Target Start/End: Complemental strand, 4542366 - 4542304
Alignment:
Q  427 ttcttaaatccattgcttcttgacacctccttttttgctc-ttttgatcatattttctcttgc 488  Q
    ||||||| |||||| |||||||||||||||| |||| ||| |||| |||||||||||||||||    
T  4542366 ttcttaattccattacttcttgacacctcctctttttctctttttaatcatattttctcttgc 4542304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 473 - 587
Target Start/End: Complemental strand, 291229 - 291115
Alignment:
Q  473 tcatattttctcttgctttcatttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatga 572  Q
    |||| |||||||||||||| |||||||| ||| ||||||||||||||||||||||||  |||||||| |||||||||||| |||||||||||||||||||    
T  291229 tcatgttttctcttgctttaatttctttccttgtgccacatgtccctaaaatcgtgttacgaaatagtcatcgtgacacgttttaaccaatgtcgaatga 291130  T
Q  573 acctcatcctatgct 587  Q
    |||| ||||| ||||    
T  291129 accttatcctgtgct 291115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 3e-28; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 404 - 587
Target Start/End: Complemental strand, 34501728 - 34501566
Alignment:
Q  404 gatcaaacataagcccatatgacttcttaaatccattgcttcttgacacctccttttttgctctttt-gatcatattttctcttgctttcatttctttac 502  Q
    |||||||||||||||||||  | ||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||                  
T  34501728 gatcaaacataagcccata--aattcttaaatccattgcttcttgacacctcttgttttgctctttttgatcatattttctcttgc-------------- 34501645  T
Q  503 ttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctatgct 587  Q
          |||||||||||||||| |||||  |||||||||||||||||||| |||| | |||||||||||||||||||||||||||    
T  34501644 ------cacatgtccctaaaattgtgtcatgaaatagccatcgtgacacgttttagctaatgtcgaatgaacctcatcctatgct 34501566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 504 - 587
Target Start/End: Complemental strand, 2371648 - 2371565
Alignment:
Q  504 tatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctatgct 587  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||| |||| ||||    
T  2371648 tatgccacatgtccctaaaatcgtgtcacgaaatagccatcatgacacgttttaaccaatgtcgaatgaacctcgtcctgtgct 2371565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 494 - 579
Target Start/End: Complemental strand, 9953281 - 9953196
Alignment:
Q  494 tttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcat 579  Q
    ||||||| ||| |||||||||| |||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  9953281 tttcttttcttgtgccacatgttcctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcat 9953196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 517 - 587
Target Start/End: Original strand, 5738967 - 5739037
Alignment:
Q  517 cctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctatgct 587  Q
    |||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||| ||||    
T  5738967 cctaaaatcgtgtcacgaaatagccatcgtgacgcgttttaaccaatgtcgaatgaacctcatcctttgct 5739037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 506 - 580
Target Start/End: Original strand, 23379580 - 23379654
Alignment:
Q  506 tgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatc 580  Q
    |||||||||| |||| ||||||||| ||||||||| ||||||||||| ||||| ||||||||| |||||||||||    
T  23379580 tgccacatgttcctagaatcgtgtcacgaaatagctatcgtgacacgttttaatcaatgtcgagtgaacctcatc 23379654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 506 - 580
Target Start/End: Original strand, 23388919 - 23388993
Alignment:
Q  506 tgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatc 580  Q
    |||||||||| |||| ||||||||| ||||||||| ||||||||||| ||||| ||||||||| |||||||||||    
T  23388919 tgccacatgttcctagaatcgtgtcacgaaatagctatcgtgacacgttttaatcaatgtcgagtgaacctcatc 23388993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 404 - 582
Target Start/End: Original strand, 43682483 - 43682640
Alignment:
Q  404 gatcaaacataagcccatatgacttcttaaatccattgcttcttgacacctccttttttgctctttt-gatcatattttctcttgctttcatttctttac 502  Q
    ||||||||||||||| |||  | ||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||                 
T  43682483 gatcaaacataagcctata--aattcttaaatccattgcttcttgacacctcatgttttgctctttttgatcatattttctcttgctg------------ 43682568  T
Q  503 ttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcct 582  Q
            |||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  43682569 --------catgtccctaaaatcgtgtcacgaaatagccgtcgtgacacgttttaaccaatgtcgaatgaacctcatcct 43682640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 473 - 582
Target Start/End: Complemental strand, 20520217 - 20520109
Alignment:
Q  473 tcatattttctcttgctttcatttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatga 572  Q
    |||| ||||||||||||||||||||||  ||| ||| ||| || | |||||||||||| |||||||||||| |||||||| |||||||||||||||||||    
T  20520217 tcatgttttctcttgctttcatttcttcccttgtgctacacgttc-taaaatcgtgtcacgaaatagccattgtgacacgttttaaccaatgtcgaatga 20520119  T
Q  573 acctcatcct 582  Q
    ||||||||||    
T  20520118 acctcatcct 20520109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 494 - 587
Target Start/End: Original strand, 45156673 - 45156766
Alignment:
Q  494 tttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctatgct 587  Q
    ||||||| ||| |||||||||| |||||||||||||| |||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||    
T  45156673 tttctttccttgtgccacatgttcctaaaatcgtgtcacgaaatagccattgtgacacgttttaatcaatgtcgaatgaacctcatcctgtgct 45156766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 494 - 580
Target Start/End: Original strand, 25595439 - 25595525
Alignment:
Q  494 tttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatc 580  Q
    ||||||| ||| ||| |||||| |||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||    
T  25595439 tttctttccttgtgcgacatgttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatc 25595525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 517 - 580
Target Start/End: Original strand, 17895295 - 17895358
Alignment:
Q  517 cctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatc 580  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17895295 cctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatc 17895358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 494 - 580
Target Start/End: Original strand, 25592254 - 25592340
Alignment:
Q  494 tttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatc 580  Q
    ||||||| ||| ||| |||||| |||||||||||||| |||||||| |||||| ||||| |||||||||||||||||||||||||||    
T  25592254 tttctttccttgtgcgacatgttcctaaaatcgtgtcacgaaatagtcatcgtaacacgttttaaccaatgtcgaatgaacctcatc 25592340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 510 - 579
Target Start/End: Original strand, 33878009 - 33878078
Alignment:
Q  510 acatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcat 579  Q
    |||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  33878009 acatgttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaataaacctcat 33878078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 505 - 580
Target Start/End: Complemental strand, 25228246 - 25228171
Alignment:
Q  505 atgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatc 580  Q
    |||||| || |||||||||||||||| ||||||| ||||||| ||||| |||||||||||||||||||||||||||    
T  25228246 atgccatatatccctaaaatcgtgtcacgaaataaccatcgtaacacgttttaaccaatgtcgaatgaacctcatc 25228171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 517 - 587
Target Start/End: Original strand, 5540773 - 5540843
Alignment:
Q  517 cctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctatgct 587  Q
    ||||||||| |||| |||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||    
T  5540773 cctaaaatcatgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctgtgct 5540843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 494 - 580
Target Start/End: Original strand, 18722065 - 18722151
Alignment:
Q  494 tttctttacttatgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatc 580  Q
    ||||||| ||| ||| |||||| |||||||||||||| |||||||| |||||||||||| ||||||| || ||||||||||||||||    
T  18722065 tttctttccttgtgcgacatgttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccgatatcgaatgaacctcatc 18722151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 517 - 579
Target Start/End: Complemental strand, 10663233 - 10663171
Alignment:
Q  517 cctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcat 579  Q
    |||||||||||||| ||||||| ||||||||||||| ||||||||||||||| ||||||||||    
T  10663233 cctaaaatcgtgtcacgaaatatccatcgtgacacgttttaaccaatgtcgattgaacctcat 10663171  T

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Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 447 - 510
Target Start/End: Complemental strand, 25229515 - 25229451
Alignment:
Q  447 tgacacctccttttttgctctttt-gatcatattttctcttgctttcatttctttacttatgcca 510  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||| |||||    
T  25229515 tgacacctcctgttttgctctttttgatcatattttctcttgctttcatttctttccttgtgcca 25229451  T

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Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 517 - 573
Target Start/End: Complemental strand, 23612801 - 23612745
Alignment:
Q  517 cctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaa 573  Q
    |||||||||||||| |||||||||||| |||||||| ||||| ||||||||||||||    
T  23612801 cctaaaatcgtgtcacgaaatagccattgtgacacgttttaaacaatgtcgaatgaa 23612745  T

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Target: scaffold0270 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 506 - 581
Target Start/End: Original strand, 826 - 901
Alignment:
Q  506 tgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcc 581  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  826 tgccacatgttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaaccttatcc 901  T

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Target: scaffold0270; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 506 - 581
Target Start/End: Original strand, 4186 - 4261
Alignment:
Q  506 tgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcc 581  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  4186 tgccacatgttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaaccttatcc 4261  T

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Target: scaffold0270; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 506 - 581
Target Start/End: Original strand, 11316 - 11391
Alignment:
Q  506 tgccacatgtccctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcc 581  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  11316 tgccacatgttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaaccttatcc 11391  T

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Target: scaffold0035 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 517 - 580
Target Start/End: Complemental strand, 61819 - 61756
Alignment:
Q  517 cctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatc 580  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  61819 cctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatc 61756  T

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Target: scaffold0381 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 517 - 573
Target Start/End: Original strand, 6331 - 6387
Alignment:
Q  517 cctaaaatcgtgtcgcgaaatagccatcgtgacacgatttaaccaatgtcgaatgaa 573  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  6331 cctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaa 6387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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