View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9821_low_10 (Length: 338)
Name: NF9821_low_10
Description: NF9821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9821_low_10 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 14 - 338
Target Start/End: Complemental strand, 24459969 - 24459644
Alignment:
| Q |
14 |
aaaacttccctctggtacctgtcaaagaaaagcgattattttctttgagtaatcaaatcaaaacacataatgcttgagagtgttgtcagggtttaattgt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24459969 |
aaaacttccctctggtacctgtcaaagaaaagcgattattttctttgagtaatcaaatcaaaacacataatgcttgagagtgttgtcagggtttaattgt |
24459870 |
T |
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| Q |
114 |
gtctgtaatatcacatcatatattgtgtataaacaattgcacttgtttcannnnnnnggtagttctgttatcactagtttcagtg-ttttttattcaatt |
212 |
Q |
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| T |
24459869 |
gtctgtaatatcacatcatatattgtgtataaacaattacacttgtttcatttttttggtagttctgttatcactagtttcagtgtttttttattcaatt |
24459770 |
T |
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| Q |
213 |
ggagattcttatcagtatctactcgctcttcattgcattccaaattgcattgtttgtagtggatatgtggtttttcgttcataggttgtatctggatgga |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24459769 |
ggagattcttatcagtatctactcgctcttcattgcattccaaattgcattgtttgtagtggatatgtggtttttcgttcataggttgtatctggatgga |
24459670 |
T |
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| Q |
313 |
gatggttaatggaagggaatctgact |
338 |
Q |
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| T |
24459669 |
gttggttaacggaagggaatctgact |
24459644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 338
Target Start/End: Complemental strand, 24478134 - 24477811
Alignment:
| Q |
14 |
aaaacttccctctggtacctgtcaaagaaaagcgattattttctttgagtaatcaaatcaaaacacataatgcttgagagtgttgtcagggtttaattgt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
24478134 |
aaaacttccctctggtacctgtcaaagaaaagcgattattttctttgattaagcaaatcaaaacacataattcttgagagtgttgtcagggtttaattgt |
24478035 |
T |
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| Q |
114 |
gtctgtaatatcacatcatatattgtgtataaacaattgcacttgtttcannnnnnnggtagttctgttatcactagtttcagtgttttttattcaattg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
24478034 |
gtctgtaatatcacatcatatattgtgtataaacaattacgcttgtttcattgttttggtagttctgttatcactagtttcagtgtttgttattcaattg |
24477935 |
T |
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| Q |
214 |
gagattcttatcagtatctactcgctcttcattgcattccaaattgcattgtttgtagtggatatgtggtttttcgttcataggttgtatctggatggag |
313 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||| ||| |||||||||||||||||||||||||| |||||| |
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| T |
24477934 |
aagattcttatcagtatctactcgcccttcattgcattccaaattgcattgttagcagtggagatggggtttttcgttcataggttgtatctgaatggag |
24477835 |
T |
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| Q |
314 |
atggttaatggaagggaatctgact |
338 |
Q |
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||||| ||||||| ||||||||| |
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| T |
24477834 |
ttggtt-atggaagttaatctgact |
24477811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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