View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9821_low_17 (Length: 270)
Name: NF9821_low_17
Description: NF9821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9821_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 23670906 - 23670653
Alignment:
| Q |
1 |
ctccttcccacatctgttcgaacaaagaatagaattagacgatatgattcctctacgaagcagattgtctttcgttggtaagagaatttgtaacaactgc |
100 |
Q |
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| T |
23670906 |
ctccttcccacacccgttcgaacaaagaatagaattagacg-------tcgtctacgaagcagattgtctttcgttggtaagagaatttgtaacaaccgc |
23670814 |
T |
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| Q |
101 |
caagtaaacaaagagaccttcaactaagccgctttattccaaacaatgtcataactgtcaaaactatccaccttctctacataagacaacttatggtata |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||| |
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| T |
23670813 |
caagcaaacaaagagaccttcaactaagccgctttattccaaacaatgtcataactgtcagaactatccaccttctctaaataagac-acttatggtata |
23670715 |
T |
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| Q |
201 |
cgctggtaactatatagctgttgcccgaatctaaactccggtcccatttgtcatcaacacca |
262 |
Q |
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| T |
23670714 |
cgccggtaactatatagctgttgcccgaatctaaactccggtcccatttgtcatcaacacca |
23670653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 24043182 - 24042929
Alignment:
| Q |
1 |
ctccttcccacatctgttcgaacaaagaatagaattagacgatatgattcctctacgaagcagattgtctttcgttggtaagagaatttgtaacaactgc |
100 |
Q |
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| T |
24043182 |
ctccttcccacacccgttcgaacaaagaatagaattagacg-------tcgtctacgaagcagattgtctttcgttggtaagagaatttgtaacaaccgc |
24043090 |
T |
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| Q |
101 |
caagtaaacaaagagaccttcaactaagccgctttattccaaacaatgtcataactgtcaaaactatccaccttctctacataagacaacttatggtata |
200 |
Q |
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| T |
24043089 |
caagcaaacaaagagaccttcaactaagccgctttattccaaacaatgtcataactgtcagaactatccaccttctctaaataagac-acttatggtata |
24042991 |
T |
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| Q |
201 |
cgctggtaactatatagctgttgcccgaatctaaactccggtcccatttgtcatcaacacca |
262 |
Q |
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| T |
24042990 |
cgccggtaactatatagctgttgcccgaatctaaactccggtcccatttgtcatcaacacca |
24042929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 9013113 - 9013260
Alignment:
| Q |
1 |
ctccttcccacatctgttcgaacaaagaatagaattagacgatatgattcctctacgaagcagattgtctttcgttggta--agagaatttgtaacaact |
98 |
Q |
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|||||| ||||| | | |||| ||||||||||| |||| ||| |||||||||| |||||||||| | || || ||| ||| || || |||||||||||| |
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| T |
9013113 |
ctcctttccacacccgctcgagcaaagaatagagttagccgacatgattcctcgacgaagcagagtatcctttgttagtataagtgattttgtaacaact |
9013212 |
T |
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| Q |
99 |
gccaagtaaacaaagagaccttcaactaagccgctttattccaaacaa |
146 |
Q |
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| T |
9013213 |
tccaagcaaacaaagagaccttctaataagccattttattctaaacaa |
9013260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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