View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9821_low_19 (Length: 251)
Name: NF9821_low_19
Description: NF9821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9821_low_19 |
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| [»] chr1 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 8004571 - 8004331
Alignment:
| Q |
11 |
cagagagaacataattttttaattttaacgtgtgtgataccctgaatttttaaaaaggaacgaattaatgaaaccattgaaaaacaatgacacttacaga |
110 |
Q |
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| T |
8004571 |
cagagagaacataattttttaattttaacgtgtgtgataccctgaatttttaaaaaggaacgaattaatgaaaccattgaaaaacaatgacacttacaga |
8004472 |
T |
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| Q |
111 |
taagaaaagattcatcccagtaagcaatgattgtggacagtttgcagtacaattaattgaaggttgaccctcataaacgataactttgtcagcaagataa |
210 |
Q |
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| T |
8004471 |
taagaaaaggttcatcccggtaagcaatgattgtggacagtttgcagtacaattaattgaaggttgaccctcataaacgataactttgtcagcaagataa |
8004372 |
T |
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| Q |
211 |
gttgccatgatgaaatcatgctcaacgataaaggctgtttt |
251 |
Q |
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| T |
8004371 |
gttgccatgatgaaatcatgctcaacgataaaggctgtttt |
8004331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 7900541 - 7900775
Alignment:
| Q |
18 |
aacataattttttaattttaacgtgtgtgataccctgaatttttaaaaaggaacgaattaatgaaaccattgaaaaacaatgacacttacagataagaaa |
117 |
Q |
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| T |
7900541 |
aacataatttttaaattttaacatgcatgataccctaaatttttaaaaagggacgaattaatgaaaccattgaaaaacaatgacacttacagataagaaa |
7900640 |
T |
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| Q |
118 |
agattcatcccagtaagcaatgattgtggacagtttgcagtacaatt-aattgaaggttgaccctcataaacgataactttgtcagcaagataagttgcc |
216 |
Q |
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| T |
7900641 |
aggttcatcccagtaagcagtgattgtggacagtttgcagtaaaattaaattgaaggttgaccctcaagaacgataactttgtcagcaagataatttgcc |
7900740 |
T |
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| Q |
217 |
atgatgaaatcatgctcaacgataaaggctgtttt |
251 |
Q |
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| T |
7900741 |
atgatgaaatcatgctcaacgataaaggctgtttt |
7900775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 51518882 - 51518651
Alignment:
| Q |
20 |
cataattttttaattttaacgtgtgtgataccctgaatttttaaaaaggaacgaattaatgaaaccattgaaaaacaatgacacttacagataagaaaag |
119 |
Q |
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| T |
51518882 |
catactttttaaattttaactttcgtgataccctaaatttttaaaacggaatgaattaatgaaaccattgaaaaacaacgacacttacagataagaaaag |
51518783 |
T |
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| Q |
120 |
attcatcccagtaagcaatgattgtggacagtttgcagtacaattaattgaaggttgaccctcataaacgataactttgtcagcaagataagttgccatg |
219 |
Q |
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| T |
51518782 |
gttcatcccggtcagcaatgattgtggacaatttgcagtacagtcaattgaaggttgaccctcataaacaataactctgtcagcaagataagttgccatg |
51518683 |
T |
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| Q |
220 |
atgaaatcatgctcaacgataaaggctgtttt |
251 |
Q |
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| T |
51518682 |
atgaaatcatgctcaacgataaaggctgtttt |
51518651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 80 - 251
Target Start/End: Original strand, 1300350 - 1300521
Alignment:
| Q |
80 |
gaaaccattgaaaaacaatgacacttacagataagaaaagattcatcccagtaagcaatgattgtggacagtttgcagtacaattaattgaaggttgacc |
179 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |||||||||| | ||||||||||| | ||||||||||||||| |
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| T |
1300350 |
gaaaccattgaaaaacaatgacacttactgataagaaaaggttcatcccagtcagcagtgattgtggagaatttgcagtacagtcaattgaaggttgacc |
1300449 |
T |
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| Q |
180 |
ctcataaacgataactttgtcagcaagataagttgccatgatgaaatcatgctcaacgataaaggctgtttt |
251 |
Q |
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| T |
1300450 |
ctcataaacaataactctgtcagcaagataagttgccatgatgaaatcatgctcaaccacaaaggctgtttt |
1300521 |
T |
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