View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9821_low_20 (Length: 250)
Name: NF9821_low_20
Description: NF9821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9821_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 5273859 - 5273639
Alignment:
| Q |
2 |
gttacattaagttgtagccttttggcgtcatcaccggcttgtgtttgaaccgggttggttaaggtgtcaaagttcgagattgagatgaatgaggaaagtg |
101 |
Q |
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| T |
5273859 |
gttacattaagttgtagccttttggcgtcatcaccggcttgtgtttgaaccgggttggttaaggtgtcgaagttcgagattgagatgaatgaggaaagtg |
5273760 |
T |
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| Q |
102 |
tatggaattgtaacagttctactttgtgtctgtcactgagggaattaaggaaacctggtttgagttttgaaaaggcattgtcttctggtgcaaaaagggt |
201 |
Q |
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| T |
5273759 |
tgtggaattgtaacagttctactttgtgtctgtcactgagggaattaaggaaacctggtttgagttttgaaaaggcattgtcttctggtgcaaaaagggt |
5273660 |
T |
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| Q |
202 |
taagccaccactgctagaatc |
222 |
Q |
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| T |
5273659 |
taagccaccactgctagaatc |
5273639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 210
Target Start/End: Complemental strand, 36151324 - 36151143
Alignment:
| Q |
29 |
tcatcaccggcttgtgtttgaaccgggttggttaaggtgtcaaagttcgagattgagatgaatgaggaaagtgtatggaattgtaacagttctactttgt |
128 |
Q |
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| T |
36151324 |
tcatcaccggcttgtgtttgaacagggttggttaaggtatcgaagtttgaaatagaaacgaatgaagcaagggagtgaaactgtaagagttcgacttttt |
36151225 |
T |
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| Q |
129 |
gtctgtcactgagggaattaaggaaacctggtttgagttttgaaaaggcattgtcttctggtgcaaaaagggttaagccacc |
210 |
Q |
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| T |
36151224 |
gtctatcagtgagggagttgaggaaccctgctttgagtttggagaatgcagaatcttctggtgcaaaaatggttaacccacc |
36151143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 29 - 204
Target Start/End: Complemental strand, 36154710 - 36154535
Alignment:
| Q |
29 |
tcatcaccggcttgtgtttgaaccgggttggttaaggtgtcaaagttcgagattgagatgaatgaggaaagtgtatggaattgtaacagttctactttgt |
128 |
Q |
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||||||||||||||||||||||| |||||||||||||| || ||||| || || || | |||||| | ||| | || || ||||| ||||| ||||| | |
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| T |
36154710 |
tcatcaccggcttgtgtttgaacagggttggttaaggtatcgaagtttgaaatagaaacgaatgaagcaagggagtgaaactgtaagagttcgacttttt |
36154611 |
T |
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| Q |
129 |
gtctgtcactgagggaattaaggaaacctggtttgagttttgaaaaggcattgtcttctggtgcaaaaagggttaa |
204 |
Q |
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|||| ||| ||||||| || ||||| |||| ||||||||| || || ||| |||||||||||||||| |||||| |
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| T |
36154610 |
gtctatcagtgagggagttgaggaaccctgctttgagtttggagaatgcagaatcttctggtgcaaaaatggttaa |
36154535 |
T |
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