View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9821_low_22 (Length: 242)
Name: NF9821_low_22
Description: NF9821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9821_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 4816243 - 4816464
Alignment:
| Q |
6 |
tttggtggtcaagagaagctctaaatgagtattcatcatgttgtgaagaagacgctataatatcaagaatcaaatcagtggtcaacactttgataaacat |
105 |
Q |
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| T |
4816243 |
tttgatggtcaagagaagctctaaatgagtattcatcatgttgtgaagaagacgctataatatcaagaatcaaatcagtggtcaacactttgataaacat |
4816342 |
T |
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| Q |
106 |
ctgactcagttttgtcttcttttaaagtaacaacactccacaagttcaatagtacttttgtccttggtgagttgaaagaagacatgttgcagcaatgaac |
205 |
Q |
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| T |
4816343 |
ctaactcagttttgtcttcttttaaagtaacaacactccacaagttcaatagtacttttgtccttggtgagttgaaagaagacatgttgcagcaatgaac |
4816442 |
T |
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| Q |
206 |
aaatctttgtgagagacaaaac |
227 |
Q |
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| T |
4816443 |
aaatctttgtgagagacaaaac |
4816464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 225
Target Start/End: Original strand, 29232224 - 29232288
Alignment:
| Q |
161 |
ttttgtccttggtgagttgaaagaagacatgttgcagcaatgaacaaatctttgtgagagacaaa |
225 |
Q |
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| T |
29232224 |
ttttgtccttggtgaattaaaagaagacatgttccagatacgaacaaacctttgtgaaagacaaa |
29232288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 225
Target Start/End: Original strand, 29345523 - 29345587
Alignment:
| Q |
161 |
ttttgtccttggtgagttgaaagaagacatgttgcagcaatgaacaaatctttgtgagagacaaa |
225 |
Q |
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| T |
29345523 |
ttttgtccttggtgaattaaaagaagacatgttccagatacgaacaaacctttgtgaaagacaaa |
29345587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 122
Target Start/End: Complemental strand, 19622591 - 19622502
Alignment:
| Q |
33 |
agtattcatcatgttgtgaagaagacgctataatatcaagaatcaaatcagtggtcaacactttgataaacatctgactcagttttgtct |
122 |
Q |
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| T |
19622591 |
agtattcatcaagttttaaagacgaagctctgatctgaagaatcaaatcaatggttaacgctttgatgaacatctgaccaagttttgtct |
19622502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 9597108 - 9597060
Alignment:
| Q |
84 |
tggtcaacactttgataaacatctgactcagttttgtcttcttttaaag |
132 |
Q |
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| T |
9597108 |
tggtcaacactatgatgaacatctgaccgacttttgtcttcttttaaag |
9597060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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