View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9821_low_23 (Length: 238)
Name: NF9821_low_23
Description: NF9821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9821_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 9e-91; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 8004023 - 8003800
Alignment:
| Q |
1 |
taaagagacaaacatagatcaatcacaacaaattcaagtttcnnnnnnnnnntcaacacaggtttagcttttaacttgtttccgttacataatttgnnnn |
100 |
Q |
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| T |
8004023 |
taaagagacagacatagatcaatcacaacaaattcaagtttcaaaaaaaaaatcaacacaggtttagcttttaacttgtttccgttacataatttgaaaa |
8003924 |
T |
|
| Q |
101 |
nnntccagctgacatcaccaacaaagatttggcttctcaaaagtcggggaagtacaacatctcaaccatagaaaaaataaacagcagttgatgaacattc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8003923 |
aaatccagctgacatcaccaacaaagatttggcttctcaaaagtcggggaagtacaacatctcaaccatagaaaaaataaacagcagttgatgaacattc |
8003824 |
T |
|
| Q |
201 |
ataacaaatcacagcagaccatag |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
8003823 |
ataacaaatcacagcagaccatag |
8003800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 7904538 - 7904760
Alignment:
| Q |
1 |
taaagagacaaacatagatcaatcacaacaaattcaagtttcnnnnnnnnnntcaacacaggtttagcttttaacttgtttccgttacataatttgnnnn |
100 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7904538 |
taaagagacagacatagatcaatcacaacaaattcaagtttcaaaaaaaaa-tcaacacaggtttagcttttaacttgtttccgttacataatttgaaaa |
7904636 |
T |
|
| Q |
101 |
nnntccagctgacatcaccaacaaagatttggcttctcaaaagtcggggaagtacaacatctcaaccatagaaaaaataaacagcagttgatgaacattc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7904637 |
aaatccagctgacatcaccaacaaagatttggcttctcaaaagtcggggaagtacaacatctcaaccatagaaaaaataaacagcagttgatgaacattc |
7904736 |
T |
|
| Q |
201 |
ataacaaatcacagcagaccatag |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
7904737 |
ataacaaatcacagcagaccatag |
7904760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 53 - 224
Target Start/End: Original strand, 7901136 - 7901307
Alignment:
| Q |
53 |
tcaacacaggtttagcttttaacttgtttccgttacataatttgnnnnnnntccagctgacatcaccaacaaagatttggcttctcaaaagtcggggaag |
152 |
Q |
| |
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|||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||| || ||| |
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| T |
7901136 |
tcaacacaggttgagcttttaacttatttccgttacataatttgaaaaaaatccagctgacatcaccaacaaagattgggcatctcaaaagtgaggaaag |
7901235 |
T |
|
| Q |
153 |
tacaacatctcaaccatagaaaaaataaacagcagttgatgaacattcataacaaatcacagcagaccatag |
224 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
7901236 |
tacaacatctcaaccatagaaaaaataaacagcagttgatgaacattcatagcaaatcacagcagatcatag |
7901307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 53 - 224
Target Start/End: Original strand, 7902967 - 7903138
Alignment:
| Q |
53 |
tcaacacaggtttagcttttaacttgtttccgttacataatttgnnnnnnntccagctgacatcaccaacaaagatttggcttctcaaaagtcggggaag |
152 |
Q |
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|||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||| || ||| |
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| T |
7902967 |
tcaacacaggttgagcttttaacttatttccgttacataatttgaaaaaaatccagctgacatcaccaacaaagattgggcatctcaaaagtgaggaaag |
7903066 |
T |
|
| Q |
153 |
tacaacatctcaaccatagaaaaaataaacagcagttgatgaacattcataacaaatcacagcagaccatag |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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|
| T |
7903067 |
tacaacatctcaaccatagaaaaaataaacagcagttgatgaacattcatagcaaatcacagcagatcatag |
7903138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 106 - 216
Target Start/End: Complemental strand, 51518278 - 51518170
Alignment:
| Q |
106 |
cagctgacatcaccaacaaagatttggcttctcaaaagtcggggaagtacaacatctcaaccatagaaaaaataaacagcagttgatgaacattcataac |
205 |
Q |
| |
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|||||||||||||||||| ||| |||||||||| | || |||||||||||||| |||||||| ||| ||||||||||||||||| ||||| |||||| |
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| T |
51518278 |
cagctgacatcaccaacacagagttggcttctctagtgt--gggaagtacaacatttcaaccattgaagaaataaacagcagttgaagaacaaacataac |
51518181 |
T |
|
| Q |
206 |
aaatcacagca |
216 |
Q |
| |
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||||||||||| |
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|
| T |
51518180 |
aaatcacagca |
51518170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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