View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9821_low_24 (Length: 236)
Name: NF9821_low_24
Description: NF9821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9821_low_24 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 110 - 236
Target Start/End: Original strand, 40755100 - 40755226
Alignment:
| Q |
110 |
ttttaagcgtgttgctagtctgatttggtgctgatataaggagatcggtttgctccttggtgttaggggtggagtttgattaatacatgggtataatatg |
209 |
Q |
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| T |
40755100 |
ttttaagcgtgttgctagtctgatttggtgctgatataaggagatcggtttgctcctcggtgttagaggtggagtttgattaatacatgggtataatttg |
40755199 |
T |
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| Q |
210 |
tctacaggctatattttatagtactct |
236 |
Q |
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| T |
40755200 |
gctacaggctatattttatagtactct |
40755226 |
T |
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Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 40746743 - 40746838
Alignment:
| Q |
1 |
aaactcgaattcaacgttgttgtaatctatttcattaaagttaaatttgaatttatagaaacaccataaactcaaagttaactttatcataatctt |
96 |
Q |
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| T |
40746743 |
aaactcaaattcaacattgtcgtaatctatttcagtaaggttaaatttgaatttgtaggaacaccataaactcaaagttaactttatcataatctt |
40746838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 12201966 - 12202028
Alignment:
| Q |
124 |
ctagtctgatttggtgctgatataaggagatcggtttgctccttggtgttaggggtggagttt |
186 |
Q |
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| T |
12201966 |
ctagtctgttttgttgctgatttaaggagttcggtttgctccttggtgttaggggcggagttt |
12202028 |
T |
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