View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9821_low_27 (Length: 228)
Name: NF9821_low_27
Description: NF9821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9821_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 49 - 211
Target Start/End: Original strand, 277772 - 277936
Alignment:
| Q |
49 |
atatattaacactttgtcagatgctaattattggcaattatatgtatattcagatctcttcttcatataaggatgaagtcactccctat-----tctatt |
143 |
Q |
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| T |
277772 |
atatattaagactttgtcagatgctaattattggcaattatatgtatattcagatctcttc---atataaggatgaagtcactccctattctattctatt |
277868 |
T |
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| Q |
144 |
ctattatatactacatacattcttattcctatttgtccactataaatagatggaatactatcaaacac |
211 |
Q |
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| T |
277869 |
ctattatatactacatacattcttattcctatttgtccactataaatagatggaatactatcaaacac |
277936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 277724 - 277759
Alignment:
| Q |
19 |
cttcaggcttaagtggtcccatacctgagcatatat |
54 |
Q |
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| T |
277724 |
cttcaggcttaagtggtcccatacctgagcatatat |
277759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 12331329 - 12331392
Alignment:
| Q |
144 |
ctattatatactacatacattcttattcctatttgtccactataaatagatggaatactatcaa |
207 |
Q |
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| T |
12331329 |
ctattatatagtacctacattcttattcctctttgtcgactataaatagatggaatactatcaa |
12331392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 25666484 - 25666421
Alignment:
| Q |
144 |
ctattatatactacatacattcttattcctatttgtccactataaatagatggaatactatcaa |
207 |
Q |
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| T |
25666484 |
ctattatatagtacctacattcttattcctctttgtcgactataaatagatggaatactatcaa |
25666421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 4434682 - 4434625
Alignment:
| Q |
150 |
tatactacatacattcttattcctatttgtccactataaatagatggaatactatcaa |
207 |
Q |
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| T |
4434682 |
tatagtacctacattcttattcctctttgtcgactataaatagatggaatactatcaa |
4434625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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