View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9821_low_30 (Length: 208)
Name: NF9821_low_30
Description: NF9821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9821_low_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 49903439 - 49903613
Alignment:
| Q |
1 |
aaattgaaataatatagcacaagaaaaatagttttgttacaaggaccaatctatttgattattgaaggggcatttgcaagaatctaagannnnnnngaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
49903439 |
aaattgaaataatatagcacaagaaaaatagttttgttacaaggaccaatctatttgattattgaaggggcatttgcaagaatctaagatttttttgaag |
49903538 |
T |
|
| Q |
101 |
gaaacaggaatttaagattttgtattttaatttggagaagtgttatttgaaagacccacaattaatctaagcaca |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
49903539 |
gaaacaggaatttaagattttgtattttaatttggagaagtgttatttgaaacacccacaattaatctaaacaca |
49903613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University