View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9821_low_7 (Length: 390)
Name: NF9821_low_7
Description: NF9821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9821_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 25 - 168
Target Start/End: Original strand, 45192637 - 45192780
Alignment:
| Q |
25 |
ggttatacaagacaaccaaggtcnnnnnnnttcaatttaattataaatatgtaaatggataatttaattgtaaatgtttttctagcttagttggttagaa |
124 |
Q |
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| T |
45192637 |
ggttatacaagacaaccaaggtcaaaaaaattcaatttaattataaatatgtaaatggataatttaattgtaaatgtttttctagcttagttggttagaa |
45192736 |
T |
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| Q |
125 |
agaaggcctcatattttacttgtcctaagttcaactcttagact |
168 |
Q |
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| T |
45192737 |
agaaggcctcatattttacttgtcctaagttcaactcttagact |
45192780 |
T |
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Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 238 - 310
Target Start/End: Original strand, 45192850 - 45192922
Alignment:
| Q |
238 |
tgcctccaaacataatgggttggtcctgcaaactataatattggtacactaatccaaatacatatattataag |
310 |
Q |
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| T |
45192850 |
tgcctccaaacataatgggttggtcctgcaaactataatattggtacactaatccaaatacatatattataag |
45192922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 164
Target Start/End: Original strand, 24958019 - 24958094
Alignment:
| Q |
89 |
taattgtaaatgtttttctagcttagttggttagaaagaaggcctcatattttacttgtcctaagttcaactctta |
164 |
Q |
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| T |
24958019 |
taattgttaatgtatctctttcttagttggttagaaagaagacctcatatcttacttatcatgggttcaactctta |
24958094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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