View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9821_low_8 (Length: 374)
Name: NF9821_low_8
Description: NF9821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9821_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 53 - 359
Target Start/End: Original strand, 37195386 - 37195692
Alignment:
| Q |
53 |
tctaacacatgagattttattctcaactttataaaaaattagttttaccatcaacctcttctctgaaaattatatatttttccaaagtctttaatatgaa |
152 |
Q |
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| T |
37195386 |
tctaacacatgagattttattctcaactttataaaaaattagttttaccatcaacctcttctctgaaaattatatatttttccaaagtctttaatatgaa |
37195485 |
T |
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| Q |
153 |
aataannnnnnncaactcaaccatatttccattttccataacatgtattattcctagcacactatgattcatcacacacccaaattcttatcctatgttc |
252 |
Q |
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| T |
37195486 |
aataatttttttcaactcaaccatatttccattttccataacatgtattattcctagcacactatgattcatcacacacccaaattcttatcctatgttc |
37195585 |
T |
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| Q |
253 |
ctattatactgtacacaatgaaaccaatcaaattcagattatcatttttattcatgttactagcctctaaatccttcatagcagaatcaaaatgtagcaa |
352 |
Q |
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| T |
37195586 |
ctattatactgtacacaatgaaaccaatcaaattcagattatcatttttattcatgttactagcctctaaatccttcatagcagaatcaaaatgtagcaa |
37195685 |
T |
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| Q |
353 |
aacttgt |
359 |
Q |
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||||||| |
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| T |
37195686 |
aacttgt |
37195692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 264 - 359
Target Start/End: Original strand, 37226543 - 37226641
Alignment:
| Q |
264 |
tacacaatgaaaccaatca---aattcagattatcatttttattcatgttactagcctctaaatccttcatagcagaatcaaaatgtagcaaaacttgt |
359 |
Q |
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| T |
37226543 |
tacacaatgaaaccaatcatcaaattcagattatcacttttattcttgttacttgtctcgcaatccatcacttcagaatcaaaatgtaacaaaacttgt |
37226641 |
T |
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