View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9821_low_9 (Length: 355)
Name: NF9821_low_9
Description: NF9821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9821_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 58 - 331
Target Start/End: Original strand, 24754406 - 24754679
Alignment:
| Q |
58 |
tttacgtactagaaagagcaatatttaattccacaaaaggggagggaaattatttgggtaaatggtaggatatgactgtataaacagtctgcacaagagt |
157 |
Q |
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| T |
24754406 |
tttacgtactagaaagagcaatatttaattccacaaaaggggagaggaattatttgggtaaatggtaggataggacagtataaacagtctgcacaagagt |
24754505 |
T |
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| Q |
158 |
gaggaaagccagcattgcagcaacaaagttgtagttttgtttcaaaaacttgaagagccattccagacgacccttgaaaagatgggaaaatattttcaag |
257 |
Q |
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| T |
24754506 |
gaggaaagccagcatcgcagcaacaaagttgtagttttgtttcaaaaacttgaagagccattctagacgacccttgaaaagatgggaaaatattttcaag |
24754605 |
T |
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| Q |
258 |
atccgcagaacaaaaaatgcatgcgagtaattgttcaagtcatcaacaattttaacatagctggaatcaactat |
331 |
Q |
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| T |
24754606 |
ttccgcagaacaaaaaatgaatgcgagtaatcgttcaagtcatcaacaattttaacataacttgaatcaactat |
24754679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 64 - 329
Target Start/End: Complemental strand, 24843560 - 24843297
Alignment:
| Q |
64 |
tactagaaagagcaatatttaattccacaaaaggggagggaaattatttgggtaaatggtaggatatgactgtataaacagtctgcacaagagtgaggaa |
163 |
Q |
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| T |
24843560 |
tactagaaagaggaatatt-aatcccatgaaaggg-agagaaattatttgggtaaatggtaggtcatgactgcataaacagtctgcacagcagtgaggat |
24843463 |
T |
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| Q |
164 |
agccagcattgcagcaacaaagttgtagttttgtttcaaaaactt-gaagagccattccagacgacccttgaaaagatgggaaaatattttcaagatccg |
262 |
Q |
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| T |
24843462 |
agccagcatcgcagcaacgaagttgtagtat-gtttcaaaaaaatcgaaaaaccattctacacgatacttgaaaagaatccaaaatattttcaagatccg |
24843364 |
T |
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| Q |
263 |
cagaacaaaaaatgcatgcgagtaattgttcaagtcatcaacaattttaacatagctggaatcaact |
329 |
Q |
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| T |
24843363 |
cacaaagaaaaaagcttgcgagtaattgttcaagttatcaaccattttaacatgattggaatcaact |
24843297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 137 - 331
Target Start/End: Complemental strand, 24900373 - 24900179
Alignment:
| Q |
137 |
ataaacagtctgcacaagagtgaggaaagccagcattgcagcaacaaagttgtagttttgtttcaaaaacttgaagagccattccagacgacccttgaaa |
236 |
Q |
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| T |
24900373 |
ataaacagtctgcacaacactaagtagagcaaccagtgcagctacaaagttgtagttttgtttcaaaaagtttacaacccattctagatgatacatgcag |
24900274 |
T |
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| Q |
237 |
agatgggaaaatattttcaagatccgcagaacaaaaaatgcatgcgagtaattgttcaagtcatcaacaattttaacatagctggaatcaactat |
331 |
Q |
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| T |
24900273 |
agatggcgaaatattttaaagattttcaagatgaaaaacgcctcggagtaattgttcaactcatcaaccattttaacataactagaatcaactat |
24900179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 24863106 - 24863167
Alignment:
| Q |
164 |
agccagcattgcagcaacaaagttgtagttttgtttcaaaaacttgaagagccattccagac |
225 |
Q |
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| T |
24863106 |
agccagcaatgcagcaacaaagttgtaattttgtttcaaaaatttgataagccattctagac |
24863167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 210
Target Start/End: Original strand, 24834254 - 24834327
Alignment:
| Q |
137 |
ataaacagtctgcacaagagtgaggaaagccagcattgcagcaacaaagttgtagttttgtttcaaaaacttga |
210 |
Q |
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| T |
24834254 |
ataaacagtctgcacaacactaagtagagcaagcagtgcagcaacaaagttgtaatcttctttcaaaaacttga |
24834327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 327
Target Start/End: Original strand, 24863224 - 24863269
Alignment:
| Q |
282 |
gagtaattgttcaagtcatcaacaattttaacatagctggaatcaa |
327 |
Q |
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| T |
24863224 |
gagtaattgttcaaatcatcaaccagtttaacataactggaatcaa |
24863269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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