View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9822_high_2 (Length: 329)
Name: NF9822_high_2
Description: NF9822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9822_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 54474945 - 54475243
Alignment:
| Q |
1 |
gagtacggtgcaactagtgagtatggactcaacctttctgcctcgagcagtgatcaatcttctgttgattatactaggaggacggtaactggaaccggag |
100 |
Q |
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| T |
54474945 |
gagtacggtgcaactagtgagtatggactcaacctttccgcctcgagcagtgatcaatcttctgttgattatactaggaggacggtaactggaaccggag |
54475044 |
T |
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| Q |
101 |
gcggatcaaaattccatgaaaaataaagcctgatatgatcctattttatttgttaactagctagatagctagcaaaagtaacagctgattatctagcgat |
200 |
Q |
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| T |
54475045 |
gcggatcaaaattccatgaaaaataaagcctgatatgatcctattttatttgttaactagctagatagctagcaaaagtaacagctgattatctagcgat |
54475144 |
T |
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| Q |
201 |
atgattttaattcaggccatggcataaaattataaaattagtgccacagggaaagaaatacatgacagagttatattcttttgtgactttttgtatgatt |
300 |
Q |
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| T |
54475145 |
atgattttaattcaggccatggc--------ataaaattagtgccacagggaaagaaatacatgacagagttatattcttttgtgactttttgtatgatt |
54475236 |
T |
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