View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9822_low_1 (Length: 414)
Name: NF9822_low_1
Description: NF9822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9822_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 18 - 395
Target Start/End: Complemental strand, 52263545 - 52263168
Alignment:
| Q |
18 |
acatcaaaacaaaggaaaaaggtaataaaagcagagcatcctagctaacataaagtaaaacaaaagcgacaagacattgaatacaagtcataccatgatg |
117 |
Q |
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| T |
52263545 |
acatcaaaacaaaggaaaaaggtaataaaagcagaacatcctagctaacataaagtaaaacaaaagcgacaagacattgaatacaagtcataccatgatg |
52263446 |
T |
|
| Q |
118 |
tccttgactagcagcaatatgcaaaggatcaaaaccagatcgattctttttagaaacagtttgaagagttgaatgttttaacaactccttaacaacatca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
52263445 |
tccttgactagcagcaatatgcaaaggatcaaaaccagatcgattctttttagaaacagtttgaagagttgaatgtttcaacaactccttaacaacatca |
52263346 |
T |
|
| Q |
218 |
agatgacccttttcagcagcagtaaacaaagcagtttcaccaagttcattctcttcattaacaacaagagcacgaacctcagcaatctcagcgttaagat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
52263345 |
agatgacccttttcagcagcagtaaacaaagcagtttcaccaagttcattctcttcattcacaacaagagcacgaacttcagcaatctcagcgttaagat |
52263246 |
T |
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| Q |
318 |
caacatcatcatcaccactcaaagtacccattatttgagaatcaatatcaagaaggatctgtctcacagcaccaacat |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52263245 |
caacatcatcatcaccactcaaagtacccattatttgagaatcaatatcaagaaggatctgtctcacagcaccaacat |
52263168 |
T |
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