View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9822_low_2 (Length: 387)
Name: NF9822_low_2
Description: NF9822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9822_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 21 - 380
Target Start/End: Original strand, 40058268 - 40058626
Alignment:
| Q |
21 |
cacatctcttctaggtgtcttcataccaaatttagtgtaagtgaatctattcatgaaataagaaaaaattattacactgtttcttcccaaaaaagagtag |
120 |
Q |
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| T |
40058268 |
cacatctcttctag-tgtcttcataccaaatttagtgtaagtgaatctattcatgaaataagaaaaaattattacactgtttcatcccaaaaaagagtag |
40058366 |
T |
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| Q |
121 |
agttattagcatttgacatcaaacatataaatatctccatgatttttctgtccatcctctagtgatcaagaccattttcccgaggagttcctctaatttg |
220 |
Q |
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| T |
40058367 |
agttattagcatttgacatcaaacatataaatctctccatgatttttctgtccatcctctagtgatcaagacaattttcccgaggagttcctctaatttg |
40058466 |
T |
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| Q |
221 |
tttatgcctaactattccactatccttgcaaatttgattaaactctccagcataagaaataccttgcttcaactatgaaagaaactcttcttttcccaaa |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40058467 |
tttatgcctaactattccactatccttgcaaatttgattaaactctccagcataagaaataccttgcttcaactatgaaagaaactcttcttttcccaaa |
40058566 |
T |
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| Q |
321 |
tatacaatgttcaaaaaattcaagatcttcaatgttgtccttcctgaagagcctttgctt |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40058567 |
tatacaatgttcaaaaaattcaagatcttcaatgttgtccttcctgaagagcctttgctt |
40058626 |
T |
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