View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9822_low_3 (Length: 371)

Name: NF9822_low_3
Description: NF9822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9822_low_3
NF9822_low_3
[»] scaffold0264 (1 HSPs)
scaffold0264 (6-333)||(19551-19877)
[»] chr8 (19 HSPs)
chr8 (234-339)||(12596865-12596970)
chr8 (245-336)||(16483758-16483848)
chr8 (234-339)||(17153549-17153654)
chr8 (245-339)||(24916101-24916194)
chr8 (246-339)||(17157041-17157134)
chr8 (234-332)||(39344601-39344699)
chr8 (257-339)||(42024060-42024142)
chr8 (234-339)||(26938656-26938761)
chr8 (275-339)||(26938956-26939020)
chr8 (234-347)||(10467536-10467649)
chr8 (234-339)||(17219756-17219863)
chr8 (236-339)||(33038226-33038329)
chr8 (245-310)||(30743932-30743997)
chr8 (275-310)||(2414911-2414946)
chr8 (234-339)||(37960052-37960157)
chr8 (295-339)||(8026216-8026260)
chr8 (95-135)||(15152212-15152252)
chr8 (94-126)||(18028189-18028221)
chr8 (166-230)||(18367260-18367324)
[»] chr3 (13 HSPs)
chr3 (236-338)||(39340783-39340885)
chr3 (248-339)||(34359342-34359433)
chr3 (234-339)||(50334687-50334792)
chr3 (234-339)||(20314899-20315004)
chr3 (262-339)||(20336792-20336869)
chr3 (234-339)||(44446904-44447009)
chr3 (275-339)||(52423019-52423083)
chr3 (257-311)||(13899503-13899557)
chr3 (83-144)||(20078433-20078495)
chr3 (178-229)||(52839629-52839680)
chr3 (192-224)||(16296047-16296079)
chr3 (236-308)||(17268873-17268945)
chr3 (245-332)||(22853435-22853520)
[»] chr7 (15 HSPs)
chr7 (246-339)||(34471234-34471327)
chr7 (234-336)||(11297772-11297874)
chr7 (245-339)||(27567729-27567823)
chr7 (245-333)||(25067669-25067757)
chr7 (275-339)||(28555292-28555356)
chr7 (78-144)||(24732899-24732966)
chr7 (265-332)||(28098550-28098617)
chr7 (178-228)||(13638062-13638112)
chr7 (234-339)||(20132065-20132170)
chr7 (192-229)||(24205229-24205266)
chr7 (192-229)||(24206747-24206784)
chr7 (95-132)||(25622227-25622264)
chr7 (245-297)||(13009428-13009480)
chr7 (100-144)||(22471466-22471510)
chr7 (236-320)||(38487350-38487434)
[»] chr2 (29 HSPs)
chr2 (234-339)||(29242613-29242718)
chr2 (236-332)||(39293164-39293260)
chr2 (257-339)||(855576-855658)
chr2 (233-339)||(24490603-24490709)
chr2 (233-310)||(30632588-30632665)
chr2 (238-311)||(35954263-35954336)
chr2 (245-311)||(6191129-6191195)
chr2 (245-339)||(31994786-31994880)
chr2 (234-339)||(30641077-30641182)
chr2 (78-144)||(758651-758719)
chr2 (234-330)||(10077625-10077720)
chr2 (275-338)||(8794589-8794651)
chr2 (78-144)||(10374252-10374319)
chr2 (276-339)||(37284276-37284339)
chr2 (233-302)||(30666665-30666734)
chr2 (233-310)||(30669057-30669134)
chr2 (250-330)||(27694582-27694662)
chr2 (78-133)||(38358402-38358458)
chr2 (233-299)||(30620956-30621022)
chr2 (233-299)||(30623577-30623643)
chr2 (289-343)||(43910171-43910225)
chr2 (234-339)||(34904022-34904127)
chr2 (95-132)||(35619633-35619670)
chr2 (95-132)||(35627638-35627675)
chr2 (192-224)||(11115516-11115548)
chr2 (78-137)||(28404326-28404385)
chr2 (99-135)||(28404392-28404428)
chr2 (166-226)||(31989348-31989407)
chr2 (178-234)||(43441794-43441850)
[»] chr1 (13 HSPs)
chr1 (234-334)||(20985944-20986044)
chr1 (236-333)||(13392827-13392924)
chr1 (252-339)||(29307657-29307744)
chr1 (275-339)||(50919373-50919436)
chr1 (257-336)||(16545484-16545563)
chr1 (234-334)||(33753012-33753112)
chr1 (178-229)||(23484707-23484758)
chr1 (259-326)||(29102861-29102928)
chr1 (78-144)||(17746388-17746457)
chr1 (99-137)||(22791695-22791733)
chr1 (257-339)||(37471007-37471089)
chr1 (95-139)||(22791758-22791802)
chr1 (77-132)||(35384360-35384416)
[»] chr5 (14 HSPs)
chr5 (244-339)||(19343563-19343658)
chr5 (234-300)||(4907045-4907111)
chr5 (272-339)||(26724122-26724189)
chr5 (245-339)||(5159540-5159634)
chr5 (289-335)||(15069946-15069992)
chr5 (236-323)||(16089712-16089799)
chr5 (245-336)||(39058520-39058611)
chr5 (95-135)||(16435813-16435853)
chr5 (178-229)||(41123474-41123525)
chr5 (290-332)||(4294815-4294857)
chr5 (166-224)||(24197503-24197561)
chr5 (95-132)||(10598416-10598453)
chr5 (78-132)||(24197436-24197492)
chr5 (275-311)||(5459230-5459266)
[»] chr4 (13 HSPs)
chr4 (234-339)||(15882183-15882288)
chr4 (236-339)||(40390901-40391003)
chr4 (275-339)||(38377819-38377883)
chr4 (234-344)||(15025784-15025894)
chr4 (232-333)||(6156045-6156145)
chr4 (237-337)||(47472199-47472298)
chr4 (257-339)||(33894460-33894542)
chr4 (278-332)||(33978504-33978557)
chr4 (78-135)||(51727243-51727301)
chr4 (192-229)||(9410308-9410345)
chr4 (291-336)||(33610140-33610185)
chr4 (95-132)||(55432583-55432620)
chr4 (192-224)||(20514655-20514687)
[»] scaffold0720 (1 HSPs)
scaffold0720 (234-339)||(5517-5622)
[»] scaffold0478 (2 HSPs)
scaffold0478 (234-339)||(3233-3337)
scaffold0478 (234-339)||(8611-8716)
[»] chr6 (15 HSPs)
chr6 (234-339)||(3807080-3807185)
chr6 (236-333)||(24672287-24672384)
chr6 (260-332)||(3336064-3336136)
chr6 (275-339)||(12611806-12611870)
chr6 (245-339)||(10516632-10516726)
chr6 (245-339)||(25042897-25042990)
chr6 (234-339)||(6197822-6197926)
chr6 (234-339)||(17957041-17957146)
chr6 (279-334)||(4405872-4405927)
chr6 (260-310)||(10311678-10311728)
chr6 (95-132)||(1309995-1310032)
chr6 (275-328)||(17141879-17141932)
chr6 (192-229)||(19418205-19418242)
chr6 (178-234)||(27660614-27660670)
chr6 (236-344)||(30465211-30465319)
[»] scaffold1911 (1 HSPs)
scaffold1911 (234-330)||(1-97)
[»] scaffold0020 (1 HSPs)
scaffold0020 (236-343)||(152224-152331)
[»] scaffold0233 (1 HSPs)
scaffold0233 (234-339)||(16975-17080)
[»] scaffold0005 (1 HSPs)
scaffold0005 (236-334)||(253799-253897)
[»] scaffold1797 (1 HSPs)
scaffold1797 (166-230)||(678-742)
[»] scaffold0022 (1 HSPs)
scaffold0022 (178-234)||(63361-63416)


Alignment Details
Target: scaffold0264 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 6 - 333
Target Start/End: Original strand, 19551 - 19877
Alignment:
Q  6 tggagaagcaaaggtatccattttttgtaaaaatatttgggttaatagtgctttacctctatgtaaaaatcattttctttttgcagaaatttcgtttttc 105  Q
    |||||||  ||||||||||||||||| ||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19551 tggagaactaaaggtatccattttttttaaaaatatttaggttaatagtgttttacccctatgtaaaaatcattttctttttgcagaaatttcgtttttc 19650  T
Q  106 aatgacctattagggggtattctaaaacaattttatttaggggataaatatnnnnnnnnnttacaagggagtaaaccggaaatgcactatattagagagg 205  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||    
T  19651 aatgacctattagggggtattttaaaacaattttttttaggggataaatataaaaaaaaattacaagggagtaaaccggaaatgcactatattagagagg 19750  T
Q  206 ggtaaaacaccattaacccaaaaatatatcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttataggga 305  Q
    ||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19751 ggtaaaatactattaacccaaaaa-atatcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttataggga 19849  T
Q  306 ctaaacataaaaattcatgattttgtag 333  Q
    ||||||||||||||||||||||||||||    
T  19850 ctaaacataaaaattcatgattttgtag 19877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 234 - 339
Target Start/End: Complemental strand, 12596970 - 12596865
Alignment:
Q  234 tcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtag 333  Q
    |||||||||| |||| |||||| |||||||||||||| || ||||||||||||| ||||||||||||||||||||||| |||||| | ||||||||||||    
T  12596970 tcaaaatagagactaattttacaaactacaatattttggaggactaaaattaccattaaaattttatagggactaaacttaaaaacttatgattttgtag 12596871  T
Q  334 ggacta 339  Q
     |||||    
T  12596870 agacta 12596865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 245 - 336
Target Start/End: Complemental strand, 16483848 - 16483758
Alignment:
Q  245 actatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtaggga 336  Q
    ||||||||||| |||||||||||||| || ||||||||||||| ||||||||||| ||||||||||| |||||| |||||||| ||||||||    
T  16483848 actatttttacaaactacaatatttt-gaagactaaaattaccattaaaattttacagggactaaacttaaaaactcatgattctgtaggga 16483758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 234 - 339
Target Start/End: Complemental strand, 17153654 - 17153549
Alignment:
Q  234 tcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtag 333  Q
    |||||||||  |||||||| || ||||  |||||||| || ||||||||||||| ||||||||| ||||||||||| | |||||| ||||||||||||||    
T  17153654 tcaaaatagggactattttaacaaacttaaatattttggaggactaaaattaccattaaaatttcatagggactaagcttaaaaactcatgattttgtag 17153555  T
Q  334 ggacta 339  Q
    ||||||    
T  17153554 ggacta 17153549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 245 - 339
Target Start/End: Original strand, 24916101 - 24916194
Alignment:
Q  245 actatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtagggacta 339  Q
    ||||||||||| ||||||| |||||| || ||| ||||||||| ||||||||||||||||||||||| |||||| |||||||||| || ||||||    
T  24916101 actatttttacaaactaca-tattttggaggacgaaaattaccattaaaattttatagggactaaacttaaaaactcatgattttatatggacta 24916194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 246 - 339
Target Start/End: Original strand, 17157041 - 17157134
Alignment:
Q  246 ctatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtagggacta 339  Q
    ||||||| || ||||| |||||||| || ||||||||||||| ||||||||| |||||||||||   |||||| ||||||||||||||||||||    
T  17157041 ctattttaacaaactaaaatattttggaggactaaaattaccattaaaatttcatagggactaagtttaaaaaatcatgattttgtagggacta 17157134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 234 - 332
Target Start/End: Complemental strand, 39344699 - 39344601
Alignment:
Q  234 tcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgta 332  Q
    ||||||||  ||||||| |||| |||||||||||| | || ||||||| ||||| ||||||||||||||||||| ||  |||||||| |||||||||||    
T  39344699 tcaaaatatgaactattcttacaaactacaatattatggaggactaaagttaccattaaaattttatagggacttaatttaaaaatttatgattttgta 39344601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 257 - 339
Target Start/End: Original strand, 42024060 - 42024142
Alignment:
Q  257 aactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtagggacta 339  Q
    |||||||||||||| || ||||||||||| | |||||||||||| ||||||||||  ||||| || |||||||||| ||||||    
T  42024060 aactacaatattttggaggactaaaattagcattaaaattttatggggactaaactcaaaaactcgtgattttgtaaggacta 42024142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 234 - 339
Target Start/End: Original strand, 26938656 - 26938761
Alignment:
Q  234 tcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtag 333  Q
    |||||||||  |||||| |||| |||||| | ||| | || ||| ||||||||| ||||||||||||||||||||||| | |||| | |||||||| |||    
T  26938656 tcaaaatagggactattcttacaaactactaaattatggaggacaaaaattaccattaaaattttatagggactaaacttgaaaacttatgattttatag 26938755  T
Q  334 ggacta 339  Q
    ||||||    
T  26938756 ggacta 26938761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 275 - 339
Target Start/End: Original strand, 26938956 - 26939020
Alignment:
Q  275 gactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtagggacta 339  Q
    ||||||||||||| ||||||||||||||||||||||| | |||| | |||||||| |||||||||    
T  26938956 gactaaaattaccattaaaattttatagggactaaacttgaaaacttatgattttatagggacta 26939020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 347
Target Start/End: Original strand, 10467536 - 10467649
Alignment:
Q  234 tcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtag 333  Q
    |||||||||  |||||| |||| |  ||||||||| | || || |||||||||| ||||||||||||| ||| ||||| ||||||||  |||||||||||    
T  10467536 tcaaaatagggactattcttacaagttacaatattatggaggattaaaattaccattaaaattttataaggaataaacttaaaaatttgtgattttgtag 10467635  T
Q  334 ggactacaaaaata 347  Q
     ||||  |||||||    
T  10467636 agactgtaaaaata 10467649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 234 - 339
Target Start/End: Original strand, 17219756 - 17219863
Alignment:
Q  234 tcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaa--acataaaaattcatgattttgt 331  Q
    |||||||||  ||||||||||| ||||| |||||||   | ||||||||||||| ||||||||| |||||||||||   | |||||  ||||||||||||    
T  17219756 tcaaaatagggactatttttacaaactaaaatatttagaaggactaaaattaccattaaaatttcatagggactaagcgcttaaaatctcatgattttgt 17219855  T
Q  332 agggacta 339  Q
    || |||||    
T  17219856 agagacta 17219863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 339
Target Start/End: Complemental strand, 33038329 - 33038226
Alignment:
Q  236 aaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtaggg 335  Q
    ||||||| ||||||| |||| |||| ||||||| | || || |||||||  | ||||||||| ||||| ||||||| ||||| || ||| ||||||||||    
T  33038329 aaaataggaactattcttacaaactgcaatattatggaggattaaaattttcattaaaatttaataggaactaaacttaaaagttgatgtttttgtaggg 33038230  T
Q  336 acta 339  Q
    ||||    
T  33038229 acta 33038226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 310
Target Start/End: Complemental strand, 30743997 - 30743932
Alignment:
Q  245 actatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaa 310  Q
    ||||||||||| |||||||||||| | || ||||||||||| | ||||| ||||||||| ||||||    
T  30743997 actatttttacaaactacaatattattgaggactaaaattaacattaaagttttataggtactaaa 30743932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 310
Target Start/End: Complemental strand, 2414946 - 2414911
Alignment:
Q  275 gactaaaattaccgttaaaattttatagggactaaa 310  Q
    ||||||||||||| ||||||||||||||||||||||    
T  2414946 gactaaaattaccattaaaattttatagggactaaa 2414911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 339
Target Start/End: Original strand, 37960052 - 37960157
Alignment:
Q  234 tcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtag 333  Q
    |||||||| ||| |||| |||| ||||  ||| | || |||||||||||||||| |||| ||||| || |  |||||| || ||| |||| |||||||||    
T  37960052 tcaaaataaaaaatattcttacaaacttaaatgtattggacgactaaaattaccattaatattttgtaagttctaaacttagaaaatcataattttgtag 37960151  T
Q  334 ggacta 339  Q
    ||||||    
T  37960152 ggacta 37960157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 8026216 - 8026260
Alignment:
Q  295 ttttatagggactaaacataaaaattcatgattttgtagggacta 339  Q
    ||||||||||||||||| |||||| | || |||||||||||||||    
T  8026216 ttttatagggactaaacttaaaaacttataattttgtagggacta 8026260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 15152212 - 15152252
Alignment:
Q  95 tttcgtttttcaatgacctattagggggtattctaaaacaa 135  Q
    ||||||||||  ||||||||||||||||||||| |||||||    
T  15152212 tttcgtttttttatgacctattagggggtattccaaaacaa 15152252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 18028189 - 18028221
Alignment:
Q  94 atttcgtttttcaatgacctattagggggtatt 126  Q
    ||||||||||| |||||||||||||||||||||    
T  18028189 atttcgtttttgaatgacctattagggggtatt 18028221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 18367260 - 18367324
Alignment:
Q  166 ttacaagggagtaaaccggaaatgcactatattagagaggggtaaaacaccattaacccaaaaat 230  Q
    ||||| ||||| ||||||||||||  |||||||| || |||||||| |||| ||||||| |||||    
T  18367260 ttacaggggagaaaaccggaaatgacctatattacaggggggtaaagcacctttaaccctaaaat 18367324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 236 - 338
Target Start/End: Complemental strand, 39340885 - 39340783
Alignment:
Q  236 aaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtaggg 335  Q
    |||||||  ||||||||||| |||||||||||||| || ||||||||||||| |||||| |||||||||||||||| |||||| |  |||||||||||||    
T  39340885 aaaatagggactatttttacaaactacaatattttggatgactaaaattaccattaaaactttatagggactaaacttaaaaactagtgattttgtaggg 39340786  T
Q  336 act 338  Q
    |||    
T  39340785 act 39340783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 339
Target Start/End: Complemental strand, 34359433 - 34359342
Alignment:
Q  248 atttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtagggacta 339  Q
    |||||||| ||||| |||||||| || || |||||||||| ||||||||||||| ||||||||| |||||| ||||||||||||| ||||||    
T  34359433 atttttacaaactataatattttggaggaataaaattaccattaaaattttatatggactaaacttaaaaactcatgattttgtaaggacta 34359342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 234 - 339
Target Start/End: Original strand, 50334687 - 50334792
Alignment:
Q  234 tcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtag 333  Q
    ||||||||| ||||| |||||| |||||||||||||| || ||||||||||| | ||||||||||||||||| ||||   ||||| |||||||||| |||    
T  50334687 tcaaaataggaactaattttacaaactacaatattttggaagactaaaattatcattaaaattttatagggattaaagtaaaaaactcatgattttatag 50334786  T
Q  334 ggacta 339  Q
     |||||    
T  50334787 agacta 50334792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 234 - 339
Target Start/End: Complemental strand, 20315004 - 20314899
Alignment:
Q  234 tcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtag 333  Q
    |||||||||| |||||| |||| || | ||||||| | || |||||||||| || ||||||||||||| ||||||||  | |||| || |||||||||||    
T  20315004 tcaaaatagagactattattacaaaattcaatattatggaggactaaaattgccattaaaattttataaggactaaagttgaaaactcttgattttgtag 20314905  T
Q  334 ggacta 339  Q
    ||||||    
T  20314904 ggacta 20314899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 339
Target Start/End: Complemental strand, 20336869 - 20336792
Alignment:
Q  262 caatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtagggacta 339  Q
    ||||||| | || ||||||||||||| ||||||||||||| ||||||||  | |||| || |||||||||||||||||    
T  20336869 caatattatggaggactaaaattaccattaaaattttataaggactaaagttgaaaactcttgattttgtagggacta 20336792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 339
Target Start/End: Original strand, 44446904 - 44447009
Alignment:
Q  234 tcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtag 333  Q
    |||||| ||| |||||| |||| ||||| ||||||||  | ||||||||||||  |||||||||||| |||| ||||| |||||| |||| ||| | |||    
T  44446904 tcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattaaaattttattgggattaaacttaaaaactcataattatatag 44447003  T
Q  334 ggacta 339  Q
    ||||||    
T  44447004 ggacta 44447009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 275 - 339
Target Start/End: Complemental strand, 52423083 - 52423019
Alignment:
Q  275 gactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtagggacta 339  Q
    ||||||||||||| || ||| |||||||||||||||| | |||| || |||||||||||||||||    
T  52423083 gactaaaattaccattgaaactttatagggactaaacttgaaaactcgtgattttgtagggacta 52423019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 311
Target Start/End: Complemental strand, 13899557 - 13899503
Alignment:
Q  257 aactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaac 311  Q
    |||||||||||| | || ||||||||||||| ||||||||||||||| |||||||    
T  13899557 aactacaatattatggaggactaaaattaccattaaaattttataggaactaaac 13899503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 20078495 - 20078433
Alignment:
Q  83 tttttgcagaaattt-cgtttttcaatgacctattagggggtattctaaaacaattttattta 144  Q
    ||||||||||| ||| | ||||| |||||||||||||||||||||| ||||||||||| ||||    
T  20078495 tttttgcagaatttttcatttttgaatgacctattagggggtattccaaaacaatttttttta 20078433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 52839629 - 52839680
Alignment:
Q  178 aaaccggaaatgcactatattagagaggggtaaaacaccattaacccaaaaa 229  Q
    ||||||||||||  |||||||| || |||||||||||| |||||||||||||    
T  52839629 aaaccggaaatgacctatattacaggggggtaaaacactattaacccaaaaa 52839680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 16296047 - 16296079
Alignment:
Q  192 ctatattagagaggggtaaaacaccattaaccc 224  Q
    ||||||||||||| |||||||||||||||||||    
T  16296047 ctatattagagagaggtaaaacaccattaaccc 16296079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 308
Target Start/End: Complemental strand, 17268945 - 17268873
Alignment:
Q  236 aaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggacta 308  Q
    |||||| | ||||||||||| |||||||||| | | || ||||||||||| | |||||||| |||| ||||||    
T  17268945 aaaatatagactatttttacaaactacaataatatagaagactaaaattatcattaaaattgtatatggacta 17268873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 332
Target Start/End: Original strand, 22853435 - 22853520
Alignment:
Q  245 actatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgta 332  Q
    ||||||||||| || || |||||| | || ||||||||||||| |||||||||  ||| |||||||| | |||||| ||| |||||||    
T  22853435 actatttttacaaattaaaatattatggaggactaaaattaccattaaaattt--tagagactaaacttgaaaatttatggttttgta 22853520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 246 - 339
Target Start/End: Complemental strand, 34471327 - 34471234
Alignment:
Q  246 ctatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtagggacta 339  Q
    ||||| |||| |||||||||||||| || ||||||||||||| ||||||||||||||||||||||| |||||  |  |||||||||||||||||    
T  34471327 ctattattacaaactacaatattttggaggactaaaattaccattaaaattttatagggactaaacttaaaagcttgtgattttgtagggacta 34471234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 234 - 336
Target Start/End: Complemental strand, 11297874 - 11297772
Alignment:
Q  234 tcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtag 333  Q
    |||||||||  ||||||||||| ||||| |||||||| || ||||||||||||| ||||||||| ||||| ||||| | |||||| |||| |||||||||    
T  11297874 tcaaaatagggactatttttacaaactaaaatattttggaggactaaaattaccattaaaatttcataggaactaagcttaaaaactcattattttgtag 11297775  T
Q  334 gga 336  Q
    |||    
T  11297774 gga 11297772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 245 - 339
Target Start/End: Original strand, 27567729 - 27567823
Alignment:
Q  245 actatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtagggacta 339  Q
    |||||| |||| |||||||||||| |  | ||||||||||||| ||||||||||||||||| ||||| | |||| ||||||||||||||||||||    
T  27567729 actattcttacaaactacaatattatgtaggactaaaattaccattaaaattttatagggaataaactttaaaactcatgattttgtagggacta 27567823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 245 - 333
Target Start/End: Complemental strand, 25067757 - 25067669
Alignment:
Q  245 actatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtag 333  Q
    ||||||||||| ||||| |||||| | || || |||||||||| ||||||||||||||  || |||| |||||||| ||||||||||||    
T  25067757 actatttttacaaactataatattatggaggattaaaattaccattaaaattttatagaaaccaaacttaaaaatttatgattttgtag 25067669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 275 - 339
Target Start/End: Complemental strand, 28555356 - 28555292
Alignment:
Q  275 gactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtagggacta 339  Q
    ||||||||||||| ||||||||||||| ||||||||| |||||| ||| |||||||||| |||||    
T  28555356 gactaaaattaccattaaaattttatatggactaaacttaaaaaatcacgattttgtagagacta 28555292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 144
Target Start/End: Complemental strand, 24732966 - 24732899
Alignment:
Q  78 ttttctttttgcagaaattt-cgtttttcaatgacctattagggggtattctaaaacaattttattta 144  Q
    |||| ||||||| ||||||| ||||||| ||||||||||||  |||||||||||||||||||| ||||    
T  24732966 ttttttttttgcggaaattttcgtttttgaatgacctattacagggtattctaaaacaatttttttta 24732899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 332
Target Start/End: Complemental strand, 28098617 - 28098550
Alignment:
Q  265 tattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgta 332  Q
    |||| |||| ||||||||||||| |||||||||||||  ||| |||| |||||| |||||||||||||    
T  28098617 tattatcgaggactaaaattaccattaaaattttataaagaccaaacttaaaaactcatgattttgta 28098550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 13638112 - 13638062
Alignment:
Q  178 aaaccggaaatgcactatattagagaggggtaaaacaccattaacccaaaa 228  Q
    ||||||||||||  |||||||| || |||||||||||| ||||||||||||    
T  13638112 aaaccggaaatgacctatattacaggggggtaaaacactattaacccaaaa 13638062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 339
Target Start/End: Complemental strand, 20132170 - 20132065
Alignment:
Q  234 tcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtag 333  Q
    |||||| ||| |||||| |||| || || ||||||||  | ||||||||||||  |||||||||||| |  ||||||| |||||| |||| ||| | |||    
T  20132170 tcaaaacagagactattcttacaaattataatattttttaggactaaaattacaattaaaattttattgaaactaaacttaaaaactcataattatatag 20132071  T
Q  334 ggacta 339  Q
    ||||||    
T  20132070 ggacta 20132065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 24205229 - 24205266
Alignment:
Q  192 ctatattagagaggggtaaaacaccattaacccaaaaa 229  Q
    |||||||| || ||||||||||||||||||||||||||    
T  24205229 ctatattacaggggggtaaaacaccattaacccaaaaa 24205266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 24206747 - 24206784
Alignment:
Q  192 ctatattagagaggggtaaaacaccattaacccaaaaa 229  Q
    |||||||| || ||||||||||||||||||||||||||    
T  24206747 ctatattacaggggggtaaaacaccattaacccaaaaa 24206784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 25622264 - 25622227
Alignment:
Q  95 tttcgtttttcaatgacctattagggggtattctaaaa 132  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  25622264 tttcgtttttttatgacctattagggggtattctaaaa 25622227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 13009428 - 13009480
Alignment:
Q  245 actatttttactaactacaatattttcgacgactaaaattaccgttaaaattt 297  Q
    |||||| |||| |||||||||||| | || ||||||||||||| |||||||||    
T  13009428 actattcttacaaactacaatattatagaggactaaaattaccattaaaattt 13009480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 22471466 - 22471510
Alignment:
Q  100 tttttcaatgacctattagggggtattctaaaacaattttattta 144  Q
    ||||| |||||| ||||||||||||||| ||||||||||| ||||    
T  22471466 tttttgaatgacttattagggggtattcaaaaacaatttttttta 22471510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 320
Target Start/End: Complemental strand, 38487434 - 38487350
Alignment:
Q  236 aaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaatt 320  Q
    |||||||| | |||| |||| ||||| |||||| |  | || |||||||||| |||||||||||||  |||||||| ||||||||    
T  38487434 aaaatagagattattattacaaactataatattataaatgattaaaattaccattaaaattttataaagactaaacttaaaaatt 38487350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 234 - 339
Target Start/End: Original strand, 29242613 - 29242718
Alignment:
Q  234 tcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtag 333  Q
    |||||||||  |||||| |||| ||||| ||||| ||||| ||||||||||||| ||||||||||||||||||||||| | |||| || | |||||||||    
T  29242613 tcaaaatagggactattcttacaaactataatatcttcgaggactaaaattaccattaaaattttatagggactaaacttgaaaactcctaattttgtag 29242712  T
Q  334 ggacta 339  Q
    ||||||    
T  29242713 ggacta 29242718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 236 - 332
Target Start/End: Original strand, 39293164 - 39293260
Alignment:
Q  236 aaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgta 332  Q
    ||||||| ||||||| |||| || ||||||||||| || ||||||||||||| ||||||||||||||||| ||||| || |||||| ||||||||||    
T  39293164 aaaataggaactattattacaaattacaatattttagaggactaaaattaccattaaaattttatagggattaaacctagaaattcgtgattttgta 39293260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 257 - 339
Target Start/End: Complemental strand, 855658 - 855576
Alignment:
Q  257 aactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtagggacta 339  Q
    |||||||||||   ||| ||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||| ||||||    
T  855658 aactacaatatcaccgaggactaaaattaccattaaaattttatagggactaaacttaaaaactcatgattttgtaaggacta 855576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 233 - 339
Target Start/End: Original strand, 24490603 - 24490709
Alignment:
Q  233 atcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgta 332  Q
    ||||||||||  | |||| |||| |||||||||||| | || ||||||||||||  |||||||||||||| |||||||| ||||||  ||| ||||||||    
T  24490603 atcaaaatagggattattcttacaaactacaatattgtagaggactaaaattactattaaaattttatagagactaaacttaaaaacacataattttgta 24490702  T
Q  333 gggacta 339  Q
    |||||||    
T  24490703 gggacta 24490709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 233 - 310
Target Start/End: Original strand, 30632588 - 30632665
Alignment:
Q  233 atcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaa 310  Q
    ||||||||||  ||||||| ||| |||||||||||| || | ||||||||||||| |||||||||||||| |||||||    
T  30632588 atcaaaatagggactatttgtacaaactacaatattatccaagactaaaattaccattaaaattttatagagactaaa 30632665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 238 - 311
Target Start/End: Complemental strand, 35954336 - 35954263
Alignment:
Q  238 aatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaac 311  Q
    |||||| |||||| |||| |||||||||||| | || ||||||||||||| ||||||||| |||||||||||||    
T  35954336 aatagagactattcttacaaactacaatattattgaggactaaaattaccattaaaatttaatagggactaaac 35954263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 245 - 311
Target Start/End: Complemental strand, 6191195 - 6191129
Alignment:
Q  245 actatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaac 311  Q
    |||||| |||| || ||||||||| | || ||||||||||||| |||||||||||||||||||||||    
T  6191195 actattcttacaaagtacaatattatggaggactaaaattaccattaaaattttatagggactaaac 6191129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 245 - 339
Target Start/End: Original strand, 31994786 - 31994880
Alignment:
Q  245 actatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtagggacta 339  Q
    |||||| |||| || ||||||||| | ||  |||||||||||  ||||||||||| ||||| ||||| ||||||||  |||||||||||||||||    
T  31994786 actattcttacaaattacaatattatggagaactaaaattactattaaaattttaaagggattaaacttaaaaatttgtgattttgtagggacta 31994880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 339
Target Start/End: Original strand, 30641077 - 30641182
Alignment:
Q  234 tcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtag 333  Q
    |||||||||  |||| |||||| ||||| |||||||  || |||||||  |||| ||||||||| ||| ||||||| | |||||| ||||||| ||||||    
T  30641077 tcaaaatagggactacttttacaaactaaaatatttcggaggactaaatataccattaaaatttcatatggactaagcttaaaaactcatgatattgtag 30641176  T
Q  334 ggacta 339  Q
    ||||||    
T  30641177 ggacta 30641182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 758651 - 758719
Alignment:
Q  78 ttttctttttgcagaaattt-cgtttttcaatgacctatta-gggggtattctaaaacaattttattta 144  Q
    |||| ||||||||||||||| ||||||| |||||||||||| |||||||||| ||||||||||| ||||    
T  758651 ttttatttttgcagaaattttcgtttttgaatgacctattaggggggtattccaaaacaatttttttta 758719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 234 - 330
Target Start/End: Complemental strand, 10077720 - 10077625
Alignment:
Q  234 tcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttg 330  Q
    |||||||||  |||||| |||| |||||||||||| |  | || |||||||||| |||||| |||||||||||||||| | |||| |||||||||||    
T  10077720 tcaaaatagggactattattacaaactacaatattatgaaggattaaaattaccattaaaa-tttatagggactaaacttgaaaactcatgattttg 10077625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 338
Target Start/End: Complemental strand, 8794651 - 8794589
Alignment:
Q  275 gactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtagggact 338  Q
    ||||||||||||| ||||||||||||| ||||||||| | ||||||  ||||||||||||||||    
T  8794651 gactaaaattaccattaaaattttata-ggactaaacttgaaaatttgtgattttgtagggact 8794589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 10374252 - 10374319
Alignment:
Q  78 ttttctttttgcagaaattt-cgtttttcaatgacctattagggggtattctaaaacaattttattta 144  Q
    |||| ||||||||||||||| |||||||  ||||||||||||||| ||||| ||||||||||| ||||    
T  10374252 ttttttttttgcagaaattttcgtttttttatgacctattaggggatattccaaaacaatttttttta 10374319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 339
Target Start/End: Original strand, 37284276 - 37284339
Alignment:
Q  276 actaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtagggacta 339  Q
    |||||||| | | ||||||||||||||||||||||| |||||| |||| |||||||| ||||||    
T  37284276 actaaaatcatcattaaaattttatagggactaaacttaaaaactcataattttgtaaggacta 37284339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 302
Target Start/End: Original strand, 30666665 - 30666734
Alignment:
Q  233 atcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatag 302  Q
    ||||||||||  ||||||| ||| |||||||||||| |  | ||||||||||||| ||||||||||||||    
T  30666665 atcaaaatagggactatttgtacaaactacaatattattcaagactaaaattaccattaaaattttatag 30666734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 310
Target Start/End: Original strand, 30669057 - 30669134
Alignment:
Q  233 atcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaa 310  Q
    ||||||||||  ||||||| ||| ||||| |||||| |  | ||||||||||||| |||||||||||||| |||||||    
T  30669057 atcaaaatagggactatttgtacaaactataatattattcaagactaaaattaccattaaaattttatagagactaaa 30669134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 330
Target Start/End: Original strand, 27694582 - 27694662
Alignment:
Q  250 ttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttg 330  Q
    |||||| ||| |||||||||| || || |||||||||| ||||||||| | ||| | ||||| |||||| |||||||||||    
T  27694582 ttttacgaaccacaatattttggaggattaaaattacctttaaaatttgacaggaattaaacttaaaaactcatgattttg 27694662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 38358402 - 38358458
Alignment:
Q  78 ttttctttttgcagaaattt-cgtttttcaatgacctattagggggtattctaaaac 133  Q
    |||| ||||||||||||||| | ||||| |||||||||||||||||||||| |||||    
T  38358402 ttttttttttgcagaaattttcatttttgaatgacctattagggggtattcgaaaac 38358458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 299
Target Start/End: Original strand, 30620956 - 30621022
Alignment:
Q  233 atcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaatttta 299  Q
    ||||||||||  ||||||| ||| |||||||||||| |  | ||||||||||||| |||||||||||    
T  30620956 atcaaaatagggactatttgtacaaactacaatattattcaagactaaaattaccattaaaatttta 30621022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 299
Target Start/End: Original strand, 30623577 - 30623643
Alignment:
Q  233 atcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaatttta 299  Q
    ||||||||||  ||||||| ||| |||||||||||| |  | ||||||||||||| |||||||||||    
T  30623577 atcaaaatagggactatttgtacaaactacaatattattcaagactaaaattaccattaaaatttta 30623643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 343
Target Start/End: Complemental strand, 43910225 - 43910171
Alignment:
Q  289 ttaaaattttatagggactaaacataaaaattcatgattttgtagggactacaaa 343  Q
    ||||||||||||||| | ||||| |||||| | ||||||||||||||||| ||||    
T  43910225 ttaaaattttataggaattaaacttaaaaacttatgattttgtagggactccaaa 43910171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 339
Target Start/End: Complemental strand, 34904127 - 34904022
Alignment:
Q  234 tcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtag 333  Q
    |||||||||  | |||| |||| |||||||||||| |  |  ||||||||||   ||| ||||||| ||||||||||| |||||| |  |||||||||||    
T  34904127 tcaaaatagggattattcttacaaactacaatattatgaagaactaaaattattattacaattttacagggactaaacttaaaaacttgtgattttgtag 34904028  T
Q  334 ggacta 339  Q
    ||||||    
T  34904027 ggacta 34904022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 35619670 - 35619633
Alignment:
Q  95 tttcgtttttcaatgacctattagggggtattctaaaa 132  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  35619670 tttcgtttttaaatgacctattagggggtattccaaaa 35619633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 35627675 - 35627638
Alignment:
Q  95 tttcgtttttcaatgacctattagggggtattctaaaa 132  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  35627675 tttcgtttttaaatgacctattagggggtattccaaaa 35627638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 11115516 - 11115548
Alignment:
Q  192 ctatattagagaggggtaaaacaccattaaccc 224  Q
    |||||||| ||||||||||||||||||||||||    
T  11115516 ctatattacagaggggtaaaacaccattaaccc 11115548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 28404385 - 28404326
Alignment:
Q  78 ttttctttttgcagaaatttc-gtttttcaatgacctattagggggtattctaaaacaatt 137  Q
    |||| |||||||||||||||  |||||| |||||||||||| ||||||||| |||||||||    
T  28404385 ttttttttttgcagaaatttttgtttttgaatgacctatta-ggggtattccaaaacaatt 28404326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 28404392 - 28404428
Alignment:
Q  99 gtttttcaatgacctattagggggtattctaaaacaa 135  Q
    |||||| |||||||||||||||||||||| |||||||    
T  28404392 gtttttgaatgacctattagggggtattccaaaacaa 28404428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 31989407 - 31989348
Alignment:
Q  166 ttacaagggagtaaaccggaaatgcactatattagagaggggtaaaacaccattaacccaa 226  Q
    ||||||||  ||||||||||||||  |||||||| || |||||||||||| ||||||||||    
T  31989407 ttacaaggaggtaaaccggaaatggcctatattacag-ggggtaaaacactattaacccaa 31989348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 43441794 - 43441850
Alignment:
Q  178 aaaccggaaatgcactatattagagaggggtaaaacaccattaacccaaaaatatat 234  Q
    ||||||||||||  |||||||| || || | ||||||| ||||||||||||||||||    
T  43441794 aaaccggaaatgacctatattacaggggtgaaaaacactattaacccaaaaatatat 43441850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 234 - 334
Target Start/End: Complemental strand, 20986044 - 20985944
Alignment:
Q  234 tcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtag 333  Q
    |||||||||  |||||| || | |||||||||||||| || ||||||||||||| ||||||||||||||||||||||  |||||| || |||||||||||    
T  20986044 tcaaaatagggactattcttgcaaactacaatattttagaagactaaaattaccattaaaattttatagggactaaatttaaaaactcgtgattttgtag 20985945  T
Q  334 g 334  Q
    |    
T  20985944 g 20985944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 236 - 333
Target Start/End: Complemental strand, 13392924 - 13392827
Alignment:
Q  236 aaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtag 333  Q
    |||||||  ||||||||||| |||||||||||||| || ||||||||||| | |||||| |||||||||||||||| | |||| | ||||||||||||    
T  13392924 aaaatagggactatttttacaaactacaatattttggatgactaaaattaacattaaaactttatagggactaaactttaaaactaatgattttgtag 13392827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 252 - 339
Target Start/End: Original strand, 29307657 - 29307744
Alignment:
Q  252 ttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtagggacta 339  Q
    |||| ||||||| ||||||  | ||||||||||||  ||||||| ||||||||||||||| |||||| ||||||||||||||||||||    
T  29307657 ttacaaactacagtattttgaaggactaaaattacaattaaaatcttatagggactaaacttaaaaactcatgattttgtagggacta 29307744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 275 - 339
Target Start/End: Original strand, 50919373 - 50919436
Alignment:
Q  275 gactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtagggacta 339  Q
    ||||||||||||| ||||||||||||||||||||||| | |||||| ||||||||||| ||||||    
T  50919373 gactaaaattaccattaaaattttatagggactaaac-ttaaaatttatgattttgtaaggacta 50919436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 336
Target Start/End: Original strand, 16545484 - 16545563
Alignment:
Q  257 aactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtaggga 336  Q
    |||||||||||||| || || |||| ||| | ||||||||||||||||| ||||| |||||| |||  ||||||||||||    
T  16545484 aactacaatattttggaggagtaaatttatcattaaaattttatagggattaaacttaaaaactcaaaattttgtaggga 16545563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 334
Target Start/End: Original strand, 33753012 - 33753112
Alignment:
Q  234 tcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtag 333  Q
    |||||||||  || ||| |||| |||||||||||| | || | ||||||| ||| ||||||||||||| ||||||||| | |||| |  |||||||||||    
T  33753012 tcaaaatagtgaccattcttacaaactacaatattatggagggctaaaatcaccattaaaattttatacggactaaactttaaaacttgtgattttgtag 33753111  T
Q  334 g 334  Q
    |    
T  33753112 g 33753112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 23484758 - 23484707
Alignment:
Q  178 aaaccggaaatgcactatattagagaggggtaaaacaccattaacccaaaaa 229  Q
    |||||| |||||  |||||||| |||||||||||||||||||||||| ||||    
T  23484758 aaaccgaaaatgacctatattacagaggggtaaaacaccattaaccctaaaa 23484707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 29102928 - 29102861
Alignment:
Q  259 ctacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgat 326  Q
    |||||||||||| || ||||||||||| | || ||||| |||||||||||||| | |||| |||||||    
T  29102928 ctacaatattttggaggactaaaattatcatttaaattgtatagggactaaacttgaaaactcatgat 29102861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 17746388 - 17746457
Alignment:
Q  78 ttttctttttgcagaaattt--cgtttttcaatgacctattaggggg-tattctaaaacaattttattta 144  Q
    |||| |||||||||||||||  ||||||| ||||||||||||||||| |||||| |||||| ||| ||||    
T  17746388 ttttttttttgcagaaatttttcgtttttgaatgacctattagggggatattcttaaacaaattttttta 17746457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 22791733 - 22791695
Alignment:
Q  99 gtttttcaatgacctattagggggtattctaaaacaatt 137  Q
    |||||| ||||||||||||| ||||||||||||||||||    
T  22791733 gtttttgaatgacctattagagggtattctaaaacaatt 22791695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 339
Target Start/End: Original strand, 37471007 - 37471089
Alignment:
Q  257 aactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtagggacta 339  Q
    ||||| |||||| | || ||||||||  ||| ||||| ||||||||||||||||| | |||| || |||||| ||||||||||    
T  37471007 aactataatattatggaggactaaaagcaccattaaatttttatagggactaaacttgaaaactcttgatttggtagggacta 37471089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 22791758 - 22791802
Alignment:
Q  95 tttcgtttttcaatgacctattagggggtattctaaaacaatttt 139  Q
    |||||||||| |||||| | ||| |||||||||||||||||||||    
T  22791758 tttcgtttttgaatgacatgttatggggtattctaaaacaatttt 22791802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 35384360 - 35384416
Alignment:
Q  77 attttctttttgcagaaattt-cgtttttcaatgacctattagggggtattctaaaa 132  Q
    ||||| ||||||||||| ||| |||||||  ||||||||||||||||||||| ||||    
T  35384360 attttttttttgcagaatttttcgtttttttatgacctattagggggtattccaaaa 35384416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 244 - 339
Target Start/End: Complemental strand, 19343658 - 19343563
Alignment:
Q  244 aactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtagggacta 339  Q
    |||||||||||| ||||||||||||||  | ||||||||||| |  ||||||||||||| |||||||| |||||| ||||||||||||||| ||||    
T  19343658 aactatttttacaaactacaatattttttaggactaaaattatcactaaaattttatagagactaaacttaaaaactcatgattttgtaggtacta 19343563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 234 - 300
Target Start/End: Complemental strand, 4907111 - 4907045
Alignment:
Q  234 tcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttat 300  Q
    |||||||||||| ||||||||| |||||||||||||| || |||||||||||||||||| |||||||    
T  4907111 tcaaaatagaaattatttttacaaactacaatattttagaagactaaaattaccgttaatattttat 4907045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 272 - 339
Target Start/End: Complemental strand, 26724189 - 26724122
Alignment:
Q  272 gacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtagggacta 339  Q
    |||||||||||||||| |||||||||||||||||||||||   |||| || |||||||||||||||||    
T  26724189 gacgactaaaattaccattaaaattttatagggactaaactcgaaaactcgtgattttgtagggacta 26724122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 245 - 339
Target Start/End: Original strand, 5159540 - 5159634
Alignment:
Q  245 actatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtagggacta 339  Q
    ||||||||||  ||||| |||| |||  | || |||||||||  |||||||||||||| |||||||| |||||| ||||||||| ||||||||||    
T  5159540 actatttttagaaactataataatttttaggattaaaattactattaaaattttatagagactaaacctaaaaactcatgatttggtagggacta 5159634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 289 - 335
Target Start/End: Complemental strand, 15069992 - 15069946
Alignment:
Q  289 ttaaaattttatagggactaaacataaaaattcatgattttgtaggg 335  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||    
T  15069992 ttaaaattttacagggactaaacataaaaactcatgattttgtaggg 15069946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 323
Target Start/End: Complemental strand, 16089799 - 16089712
Alignment:
Q  236 aaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcat 323  Q
    |||| ||| |||||| |||| ||||| ||||||||  | ||||||||||||  |||||||||||| |||||||||| |||||| ||||    
T  16089799 aaaacagagactattcttacaaactataatattttttaggactaaaattacaattaaaattttattgggactaaacttaaaaactcat 16089712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 336
Target Start/End: Original strand, 39058520 - 39058611
Alignment:
Q  245 actatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtaggga 336  Q
    |||||| |||| ||||||||| || | || ||||||||||||| ||||||||||||||||  ||||| |||||| |  ||||||| ||||||    
T  39058520 actattcttacaaactacaatgttatggaggactaaaattaccattaaaattttataggggttaaacttaaaaacttgtgattttataggga 39058611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 16435853 - 16435813
Alignment:
Q  95 tttcgtttttcaatgacctattagggggtattctaaaacaa 135  Q
    |||||||||| |||||||||||||| |||||||||||||||    
T  16435853 tttcgtttttgaatgacctattaggaggtattctaaaacaa 16435813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 41123474 - 41123525
Alignment:
Q  178 aaaccggaaatgcactatattagagaggggtaaaacaccattaacccaaaaa 229  Q
    ||||||||||||  |||||||| || |||||||||||| |||||||||||||    
T  41123474 aaaccggaaatgacctatattacaggggggtaaaacactattaacccaaaaa 41123525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 332
Target Start/End: Complemental strand, 4294857 - 4294815
Alignment:
Q  290 taaaattttatagggactaaacataaaaattcatgattttgta 332  Q
    |||||||||||| ||||||||| |||||||| |||||||||||    
T  4294857 taaaattttataaggactaaacttaaaaatttatgattttgta 4294815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 24197503 - 24197561
Alignment:
Q  166 ttacaagggagtaaaccggaaatgcactatattagagaggggtaaaacaccattaaccc 224  Q
    ||||||||| | |||||||||||| ||||||||| |  |||||||| ||||||||||||    
T  24197503 ttacaagggggaaaaccggaaatgaactatattacaagggggtaaagcaccattaaccc 24197561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 10598453 - 10598416
Alignment:
Q  95 tttcgtttttcaatgacctattagggggtattctaaaa 132  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  10598453 tttcgtttttttatgacctattagggggtattctaaaa 10598416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 132
Target Start/End: Original strand, 24197436 - 24197492
Alignment:
Q  78 ttttctttttgcagaaattt--cgtttttcaatgacctattagggggtattctaaaa 132  Q
    |||| |||||||||||||||  |||||||  ||||||||||||||||||||| ||||    
T  24197436 ttttttttttgcagaaatttttcgtttttttatgacctattagggggtattccaaaa 24197492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 5459230 - 5459266
Alignment:
Q  275 gactaaaattaccgttaaaattttatagggactaaac 311  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  5459230 gactaaatttaccattaaaattttatagggactaaac 5459266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 234 - 339
Target Start/End: Original strand, 15882183 - 15882288
Alignment:
Q  234 tcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtag 333  Q
    |||||||||  |||||||| || ||||  |||| ||| || ||||||||||||| ||||||||| ||||||||||| | |||||| ||||||||||||||    
T  15882183 tcaaaatagggactattttaacaaacttgaatagtttggaggactaaaattaccattaaaatttcatagggactaagcttaaaaactcatgattttgtag 15882282  T
Q  334 ggacta 339  Q
    ||||||    
T  15882283 ggacta 15882288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 236 - 339
Target Start/End: Complemental strand, 40391003 - 40390901
Alignment:
Q  236 aaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtaggg 335  Q
    |||||||| |||||| |||| ||||||||||| |  || ||||||||||| | ||||||||||||||| ||||||| | |||| ||||||||||||||||    
T  40391003 aaaatagagactattcttacaaactacaatatatg-gaggactaaaattatcattaaaattttataggaactaaacttgaaaactcatgattttgtaggg 40390905  T
Q  336 acta 339  Q
    ||||    
T  40390904 acta 40390901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 275 - 339
Target Start/End: Complemental strand, 38377883 - 38377819
Alignment:
Q  275 gactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtagggacta 339  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||  |||||||||| ||||||    
T  38377883 gactaaaattaccattaaaattttatagggactaaacttaaaaatttgtgattttgtaaggacta 38377819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 344
Target Start/End: Complemental strand, 15025894 - 15025784
Alignment:
Q  234 tcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtag 333  Q
    |||||||||  |||||| | || ||||| |||||||| || || |||||||||| ||||||||||||| | ||||||| ||| || || |||||||||||    
T  15025894 tcaaaatagggactattatcacaaactataatattttagaggattaaaattaccattaaaattttataagaactaaacttaataactcgtgattttgtag 15025795  T
Q  334 ggactacaaaa 344  Q
    |||||| ||||    
T  15025794 ggactaaaaaa 15025784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 333
Target Start/End: Complemental strand, 6156145 - 6156045
Alignment:
Q  232 tatcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgt 331  Q
    ||||||||||  |||||||||||  |||||||||||| | || ||||||||  ||| |||||||||||||| | |||||  ||||||  |||||||||||    
T  6156145 tatcaaaatatgaactatttttataaactacaatattatggaagactaaaaaaaccattaaaattttatagagtctaaa-ttaaaaacacatgattttgt 6156047  T
Q  332 ag 333  Q
    ||    
T  6156046 ag 6156045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 337
Target Start/End: Complemental strand, 47472298 - 47472199
Alignment:
Q  237 aaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtaggga 336  Q
    ||||| |||||||| |||  || ||||||||| |  | ||||||||||||| ||||||||||||| | ||||||| ||||||||  | ||||||||||||    
T  47472298 aaatacaaactattcttataaattacaatattatgaaggactaaaattaccattaaaattttata-gaactaaacttaaaaatttgtaattttgtaggga 47472200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 339
Target Start/End: Original strand, 33894460 - 33894542
Alignment:
Q  257 aactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtagggacta 339  Q
    |||||||||||| | || ||||||||||| | |||||||||||||  || ||||| | ||||||  |||||||||||| ||||    
T  33894460 aactacaatattatggaagactaaaattaacattaaaattttatacagattaaacttgaaaatttgtgattttgtaggaacta 33894542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 332
Target Start/End: Complemental strand, 33978557 - 33978504
Alignment:
Q  278 taaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgta 332  Q
    |||||||||| ||||||||| || || ||||||| ||||||||||||||||||||    
T  33978557 taaaattaccattaaaatttgat-ggaactaaacttaaaaattcatgattttgta 33978504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 51727243 - 51727301
Alignment:
Q  78 ttttctttttgcagaaattt-cgtttttcaatgacctattagggggtattctaaaacaa 135  Q
    |||| |||||||| |||||| |||||||  ||||||||||||||||||||| |||||||    
T  51727243 ttttttttttgcataaattttcgtttttttatgacctattagggggtattccaaaacaa 51727301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 9410308 - 9410345
Alignment:
Q  192 ctatattagagaggggtaaaacaccattaacccaaaaa 229  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  9410308 ctatattacagaggggtaaaacactattaacccaaaaa 9410345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 33610140 - 33610185
Alignment:
Q  291 aaaattttatagggactaaacataaaaattcatgattttgtaggga 336  Q
    |||||||||||||| ||||||||||||  |||| ||||||||||||    
T  33610140 aaaattttatagggtctaaacataaaagctcataattttgtaggga 33610185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 55432583 - 55432620
Alignment:
Q  95 tttcgtttttcaatgacctattagggggtattctaaaa 132  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  55432583 tttcgtttttttatgacctattagggggtattctaaaa 55432620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 20514687 - 20514655
Alignment:
Q  192 ctatattagagaggggtaaaacaccattaaccc 224  Q
    |||||||| ||||||||||||||||||||||||    
T  20514687 ctatattacagaggggtaaaacaccattaaccc 20514655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 234 - 339
Target Start/End: Original strand, 5517 - 5622
Alignment:
Q  234 tcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtag 333  Q
    |||||||||  |||| |||||| ||||| |||||||| || |||||||  |||| ||||||||| |||||||| || | |||||| ||||||||||||||    
T  5517 tcaaaatagggactacttttacaaactaaaatattttggaggactaaatataccattaaaatttcatagggaccaagcttaaaaactcatgattttgtag 5616  T
Q  334 ggacta 339  Q
    ||||||    
T  5617 ggacta 5622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0478 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0478
Description:

Target: scaffold0478; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 234 - 339
Target Start/End: Complemental strand, 3337 - 3233
Alignment:
Q  234 tcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtag 333  Q
    |||||||||  |||||||| || ||||  |||||||| || ||||||||||||| ||||||||| ||||||| ||| | |||||| ||||||||||||||    
T  3337 tcaaaatagggactattttaacaaacttaaatatttt-gaggactaaaattaccattaaaatttcatagggattaagcttaaaaactcatgattttgtag 3239  T
Q  334 ggacta 339  Q
    ||||||    
T  3238 ggacta 3233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0478; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 234 - 339
Target Start/End: Complemental strand, 8716 - 8611
Alignment:
Q  234 tcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtag 333  Q
    |||||||||  |||||||| || ||||  |||||||| || ||||||||||||| ||||||||| || |||||||| | |||||| |||||||||| |||    
T  8716 tcaaaatagggactattttaacaaacttaaatattttggaggactaaaattaccattaaaatttcattgggactaagcttaaaaactcatgattttttag 8617  T
Q  334 ggacta 339  Q
    ||||||    
T  8616 ggacta 8611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 234 - 339
Target Start/End: Complemental strand, 3807185 - 3807080
Alignment:
Q  234 tcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtag 333  Q
    |||||||||  |||||| |||| |||||| | ||| | || ||| ||||||||| |||||||||||||| ||||||||||||||| | |||||||| |||    
T  3807185 tcaaaatagggactattcttacaaactactaaattatggaggacgaaaattaccattaaaattttatagagactaaacataaaaacttatgattttatag 3807086  T
Q  334 ggacta 339  Q
    ||||||    
T  3807085 ggacta 3807080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 236 - 333
Target Start/End: Complemental strand, 24672384 - 24672287
Alignment:
Q  236 aaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtag 333  Q
    |||||||| |||||| |||| || ||||||||| | || ||||||||||||| ||||||||||||||||||||||| | |||| || ||| |||||||    
T  24672384 aaaatagagactattattacaaattacaatattatggaggactaaaattaccattaaaattttatagggactaaacttgaaaaatcgtgaatttgtag 24672287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 3336064 - 3336136
Alignment:
Q  260 tacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgta 332  Q
    ||||||||||| || |||||||||||||  ||||||||||||||| |||||| |||||||| |||||||||||    
T  3336064 tacaatattttagaggactaaaattaccactaaaattttatagggtctaaacttaaaaatttatgattttgta 3336136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 275 - 339
Target Start/End: Complemental strand, 12611870 - 12611806
Alignment:
Q  275 gactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtagggacta 339  Q
    ||||||||||||| ||||||||||| ||||| ||||  |||||||||||||||||||||||||||    
T  12611870 gactaaaattaccattaaaattttagagggattaaatttaaaaattcatgattttgtagggacta 12611806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 245 - 339
Target Start/End: Original strand, 10516632 - 10516726
Alignment:
Q  245 actatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtagggacta 339  Q
    |||||| |||| |||||||||||| | || | ||||||||| | ||| ||||||||||||||||||  |||||| | ||||||||||||||||||    
T  10516632 actattcttacaaactacaatattatggagggctaaaattatcattacaattttatagggactaaatttaaaaacttatgattttgtagggacta 10516726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 245 - 339
Target Start/End: Original strand, 25042897 - 25042990
Alignment:
Q  245 actatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtagggacta 339  Q
    |||||| |||| |||||||||||    || ||||||||||||| ||||||||||||| ||||||||  | |||| ||||||||||||||||||||    
T  25042897 actattcttacaaactacaatatcacagaggactaaaattaccattaaaattttata-ggactaaatttgaaaactcatgattttgtagggacta 25042990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 339
Target Start/End: Complemental strand, 6197926 - 6197822
Alignment:
Q  234 tcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtag 333  Q
    |||||||||| |||||| |||| |||||| | ||| | || ||||||| ||||| ||||||||||||| ||||||||| | ||||||  ||||||| |||    
T  6197926 tcaaaatagagactattcttacaaactactaaattatggaggactaaatttaccattaaaattttatatggactaaacttgaaaatt-gtgattttatag 6197828  T
Q  334 ggacta 339  Q
    ||||||    
T  6197827 ggacta 6197822  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 339
Target Start/End: Complemental strand, 17957146 - 17957041
Alignment:
Q  234 tcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtag 333  Q
    |||||| ||| |||||| |||| ||||| ||||||||  | ||||||||||||  |||||||||||| || ||||||| |||||| |||| ||| | |||    
T  17957146 tcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattaaaattttattggaactaaacttaaaaactcataattatatag 17957047  T
Q  334 ggacta 339  Q
    ||||||    
T  17957046 ggacta 17957041  T

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Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 334
Target Start/End: Original strand, 4405872 - 4405927
Alignment:
Q  279 aaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtagg 334  Q
    ||||||||| |||| |||||||||||||||||| |||||| | |||||||||||||    
T  4405872 aaaattaccattaatattttatagggactaaacttaaaaacttatgattttgtagg 4405927  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 310
Target Start/End: Complemental strand, 10311728 - 10311678
Alignment:
Q  260 tacaatattttcgacgactaaaattaccgttaaaattttatagggactaaa 310  Q
    ||||||||| | || ||||||||||||| ||||||||||||||| ||||||    
T  10311728 tacaatattgttgatgactaaaattaccattaaaattttataggaactaaa 10311678  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 1309995 - 1310032
Alignment:
Q  95 tttcgtttttcaatgacctattagggggtattctaaaa 132  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  1309995 tttcgtttttttatgacctattagggggtattctaaaa 1310032  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 328
Target Start/End: Original strand, 17141879 - 17141932
Alignment:
Q  275 gactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattt 328  Q
    ||||||||||||| |||||||||||||  |||||||| |||||| | |||||||    
T  17141879 gactaaaattaccattaaaattttatatcgactaaacttaaaaacttatgattt 17141932  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 19418205 - 19418242
Alignment:
Q  192 ctatattagagaggggtaaaacaccattaacccaaaaa 229  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  19418205 ctatattatagaggggtaaaacaccattaaccaaaaaa 19418242  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 27660614 - 27660670
Alignment:
Q  178 aaaccggaaatgcactatattagagaggggtaaaacaccattaacccaaaaatatat 234  Q
    |||||||||||||  ||||||| || || | ||||||| ||||||||||||||||||    
T  27660614 aaaccggaaatgccatatattacaggggtgaaaaacactattaacccaaaaatatat 27660670  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 344
Target Start/End: Original strand, 30465211 - 30465319
Alignment:
Q  236 aaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtaggg 335  Q
    |||||||  |||||| |||| |||| ||||||| | ||  |||||||||||| |||||||||||||||  |||||  | |||| || | ||||| |||||    
T  30465211 aaaatagggactattcttacaaacttcaatattatggaaaactaaaattaccattaaaattttataggatctaaagttgaaaactcttaattttataggg 30465310  T
Q  336 actacaaaa 344  Q
    |||| ||||    
T  30465311 actaaaaaa 30465319  T

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Target: scaffold1911 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold1911
Description:

Target: scaffold1911; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 234 - 330
Target Start/End: Complemental strand, 97 - 1
Alignment:
Q  234 tcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttg 330  Q
    |||||||||  |||||||| || ||||  |||||||| || ||||||||||||| ||||||||| ||||||||||| | |||||| |||||||||||    
T  97 tcaaaatagggactattttaacaaacttaaatattttggaggactaaaattaccattaaaatttcatagggactaagcttaaaaactcatgattttg 1  T

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Target: scaffold0020 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 236 - 343
Target Start/End: Original strand, 152224 - 152331
Alignment:
Q  236 aaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtaggg 335  Q
    |||||||  |||||| |||| | |||||||||| |  | ||||||||||||| |||||||||||||  |||||||| | ||||||||| ||||| |||||    
T  152224 aaaatagggactattcttacaatctacaatattatgaaggactaaaattaccattaaaattttataaagactaaacttgaaaattcataattttataggg 152323  T
Q  336 actacaaa 343  Q
    ||||||||    
T  152324 actacaaa 152331  T

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Target: scaffold0233 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 339
Target Start/End: Original strand, 16975 - 17080
Alignment:
Q  234 tcaaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtag 333  Q
    |||||||||  |||||| |||| || | | |||||||  | ||||||||||||| ||||||||||||||||| ||||| | |||| || ||||||| |||    
T  16975 tcaaaatagggactattcttacaaattgctatattttgtaggactaaaattaccattaaaattttatagggattaaacctgaaaactcgtgattttatag 17074  T
Q  334 ggacta 339  Q
    ||||||    
T  17075 ggacta 17080  T

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Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 334
Target Start/End: Original strand, 253799 - 253897
Alignment:
Q  236 aaaatagaaactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgattttgtagg 334  Q
    |||||||| |||||  |||| ||||| ||||||||  | ||||||||||||  ||||||||||||| | ||||||| |||||| |||| ||||| ||||    
T  253799 aaaatagagactatccttacaaactataatattttaaaggactaaaattactattaaaattttatatgaactaaacttaaaaactcataattttatagg 253897  T

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Target: scaffold1797 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1797
Description:

Target: scaffold1797; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 678 - 742
Alignment:
Q  166 ttacaagggagtaaaccggaaatgcactatattagagaggggtaaaacaccattaacccaaaaat 230  Q
    ||||| ||||| |||||  |||||  |||||||| || ||||||||||||||||||||| |||||    
T  678 ttacaggggagaaaaccaaaaatgacctatattacaggggggtaaaacaccattaaccctaaaat 742  T

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Target: scaffold0022 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 63361 - 63416
Alignment:
Q  178 aaaccggaaatgcactatattagagaggggtaaaacaccattaacccaaaaatatat 234  Q
    ||||||||||||  |||||||| || |||||||||||| ||||||||||||| ||||    
T  63361 aaaccggaaatgacctatattacag-ggggtaaaacactattaacccaaaaaaatat 63416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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