View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9823_high_2 (Length: 420)
Name: NF9823_high_2
Description: NF9823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9823_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 19 - 412
Target Start/End: Original strand, 45068202 - 45068595
Alignment:
| Q |
19 |
tcacatggggtcaagaagcagatgtagatctttgtgatggcatattcttaattcttaatatgtataatacatttgaccttgaataggtcatatgtaacca |
118 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
45068202 |
tcacatggggtcaagaagcagatgcagatctttgtgatggcatattcttaattcttaatatgtataatacatttgaccttgaataggtcataggtaacca |
45068301 |
T |
|
| Q |
119 |
catatataggaagtcaacgaatgccagcacataggtaataataggatatgatatagggtcaatgtatttgtctgcaagtactatcaccatgcctatcaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45068302 |
catatataggaagtcaacgaatgccagcacataggtaataataggatatgatatagggtcaatgtatttgtctgcaagtactatcaccatgcctatcaaa |
45068401 |
T |
|
| Q |
219 |
tggataacattgtagggtatatagcataggcatgaaagttattggatcaagtctcaatctctttgcttagaggttgaggttgaggttagtatacgtcaaa |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
45068402 |
tggataacattgtagggtatatagcataggcatgaaagttattggatcaagtctcaatctcttcgctttgaggttgaggttgaggttagtatacgtcaaa |
45068501 |
T |
|
| Q |
319 |
caaatatcgacaatgtcttcgacggtgtagcccaatgataagggttaggaaaccgaaggagttctatgtagcaagttcagagttcgatctctgc |
412 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
45068502 |
caaatatcgacaatgtctttgacggtgtagcccaatgataagggttaggaaaccgaaggagttctatgtagcaagttcagagttcgatccctgc |
45068595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University