View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9823_low_1 (Length: 899)

Name: NF9823_low_1
Description: NF9823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9823_low_1
NF9823_low_1
[»] chr6 (16 HSPs)
chr6 (117-422)||(26092688-26092993)
chr6 (187-426)||(25987972-25988211)
chr6 (666-880)||(25987488-25987702)
chr6 (509-668)||(25987730-25987889)
chr6 (779-880)||(25987339-25987440)
chr6 (20-131)||(25988210-25988321)
chr6 (308-420)||(27156386-27156497)
chr6 (277-362)||(14200609-14200693)
chr6 (315-422)||(6059751-6059857)
chr6 (314-425)||(10894937-10895052)
chr6 (276-388)||(14113862-14113973)
chr6 (279-416)||(97362-97496)
chr6 (320-377)||(31709567-31709623)
chr6 (347-425)||(17750048-17750126)
chr6 (275-348)||(32505072-32505146)
chr6 (175-246)||(25529127-25529198)
[»] chr7 (12 HSPs)
chr7 (667-875)||(37789967-37790174)
chr7 (277-426)||(37126731-37126877)
chr7 (313-408)||(17264465-17264564)
chr7 (314-413)||(8363849-8363947)
chr7 (316-425)||(18295182-18295289)
chr7 (301-403)||(19341096-19341195)
chr7 (511-649)||(37789773-37789927)
chr7 (315-377)||(380774-380835)
chr7 (540-603)||(37779954-37780017)
chr7 (277-347)||(21626436-21626506)
chr7 (328-408)||(3091439-3091516)
chr7 (371-425)||(31422067-31422121)
[»] scaffold0024 (1 HSPs)
scaffold0024 (277-426)||(11736-11884)
[»] chr5 (16 HSPs)
chr5 (293-425)||(19662989-19663120)
chr5 (317-425)||(37259259-37259366)
chr5 (301-426)||(19647101-19647226)
chr5 (277-425)||(35634916-35635063)
chr5 (306-404)||(38352107-38352204)
chr5 (278-425)||(19676788-19676935)
chr5 (306-406)||(11776070-11776167)
chr5 (277-425)||(38394981-38395124)
chr5 (301-377)||(34438388-34438463)
chr5 (277-362)||(3781277-3781361)
chr5 (280-377)||(7349570-7349666)
chr5 (319-408)||(42740241-42740328)
chr5 (347-410)||(29086284-29086347)
chr5 (277-338)||(13626766-13626827)
chr5 (277-377)||(29556788-29556887)
chr5 (370-408)||(21744499-21744537)
[»] chr1 (14 HSPs)
chr1 (317-408)||(51064663-51064753)
chr1 (314-419)||(27133135-27133239)
chr1 (277-425)||(3288021-3288170)
chr1 (319-421)||(181568-181669)
chr1 (328-425)||(47074391-47074486)
chr1 (332-425)||(4692743-4692834)
chr1 (301-376)||(48491593-48491667)
chr1 (320-419)||(16763868-16763966)
chr1 (278-347)||(51286662-51286731)
chr1 (360-419)||(8920037-8920096)
chr1 (315-376)||(25537791-25537851)
chr1 (379-426)||(12307125-12307172)
chr1 (318-376)||(10800976-10801033)
chr1 (277-346)||(26356105-26356174)
[»] chr3 (10 HSPs)
chr3 (277-420)||(43946345-43946487)
chr3 (276-426)||(19971866-19972013)
chr3 (277-406)||(21496813-21496941)
chr3 (301-404)||(55121324-55121426)
chr3 (275-425)||(14195158-14195307)
chr3 (294-403)||(54788994-54789102)
chr3 (275-416)||(8425165-8425303)
chr3 (354-424)||(38000464-38000534)
chr3 (277-347)||(7276672-7276741)
chr3 (277-346)||(14835817-14835885)
[»] chr4 (10 HSPs)
chr4 (276-425)||(16401160-16401308)
chr4 (317-408)||(24535093-24535183)
chr4 (314-425)||(44504854-44504964)
chr4 (316-413)||(7114368-7114464)
chr4 (316-425)||(43335298-43335406)
chr4 (314-397)||(27599661-27599743)
chr4 (323-397)||(53816126-53816199)
chr4 (277-347)||(9816430-9816500)
chr4 (334-426)||(55405129-55405217)
chr4 (371-425)||(37465935-37465989)
[»] chr2 (6 HSPs)
chr2 (280-413)||(41318229-41318360)
chr2 (316-425)||(5885317-5885425)
chr2 (301-426)||(5088781-5088903)
chr2 (277-393)||(43327750-43327865)
chr2 (288-347)||(9844715-9844774)
chr2 (301-347)||(19258370-19258416)
[»] chr8 (6 HSPs)
chr8 (276-419)||(20099075-20099216)
chr8 (276-382)||(32382338-32382443)
chr8 (276-382)||(32436293-32436398)
chr8 (301-415)||(18427753-18427866)
chr8 (319-425)||(35538694-35538799)
chr8 (371-425)||(33363789-33363843)
[»] scaffold0285 (1 HSPs)
scaffold0285 (320-419)||(7714-7812)
[»] scaffold0054 (1 HSPs)
scaffold0054 (320-419)||(3543-3641)


Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-145; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 117 - 422
Target Start/End: Complemental strand, 26092993 - 26092688
Alignment:
Q  117 gtatcattgcatatacctagatatgtagggagttaacatactatatactctgagatacatttcattgcagtagttgtattactcattggtttttattctt 216  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26092993 gtatcattgcatatacttagatatgtagggagttaacataccatatactctgagatacatttcattgcagtagttgtattactcattggtttttattctt 26092894  T
Q  217 ctattttataagttacatttactttcagtaattaacatattaaagagatatattgtagatcagtggcggagccggataaaaatatttgggatggccacca 316  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||| |||||||||||||    
T  26092893 ctattttataaggtacatttactttcagtaattaacatattaaagagatacattgtagatcattggcggagccggacaaaaatattagggatggccacca 26092794  T
Q  317 tcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaatcaaaaatcgataattcaaaatttaaactacacaatacat 416  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26092793 tcaaaataaactaaaatatataaatcatatttacatacaacatatttatgttgtaataaatcaaaaatcgataattcaaaatttaaactacataatacat 26092694  T
Q  417 aaaatc 422  Q
    ||||||    
T  26092693 aaaatc 26092688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 187 - 426
Target Start/End: Complemental strand, 25988211 - 25987972
Alignment:
Q  187 tagttgtattactcattggtttttattcttctattttataagttacatttactttcagtaattaacatattaaagagatatattgtagatcagtggcgga 286  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25988211 tagttgtattactcattggtttttattcttctattttataaggtacatttattttcagtaattaacatattaaagagatatattgtagatcagtggcgga 25988112  T
Q  287 gccggataaaaatatttgggatggccaccatcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaatcaaaaatcg 386  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  25988111 gccggacaaaaatatttgggatggccaccatcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaattaaaaatcg 25988012  T
Q  387 ataattcaaaatttaaactacacaatacataaaatcgata 426  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  25988011 ataattcaaaatttaaactacacaatacataaaatcgata 25987972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 666 - 880
Target Start/End: Complemental strand, 25987702 - 25987488
Alignment:
Q  666 tataaactcaccattctcctccatcacattctaaccagaatccccctgaattctggtttctttgattgtaattttagaatgtgcagcgaacataatcatt 765  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25987702 tataaactcaccattctcctccatcacattctaaccagaatccccctgaattctggtttctttgattgtaattttagaatgtgcagcgaacataatcatt 25987603  T
Q  766 atctttcatgcagtgtttataattagttgaaaaatagttacgtgtaataaggagaataaggaatatgccaattttaagatagtcacattttttagtggta 865  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25987602 atctttcatgcagtgtttataattagttgaaaaatagttatgtgtaataaggagaataaggaatatgccaattttaagatagtcacattttttagtggta 25987503  T
Q  866 ggactaggagctacc 880  Q
    |||||||||||||||    
T  25987502 ggactaggagctacc 25987488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 509 - 668
Target Start/End: Complemental strand, 25987889 - 25987730
Alignment:
Q  509 aacttccatttgctgcaatactatcttctaaatttttgtatactaattgctgcaagtatatttgataaactaatgaaatttagagttccaatacttcatc 608  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25987889 aacttccatttgctgcaatactatctgctaaatttttgtatactaattgctgcaagtatatttgataaactaatgaaatttagagttccaatacttcatc 25987790  T
Q  609 aacgcagttgcattattttaaatcatatgatatgcatgttccacacttttgctagtttat 668  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25987789 aacgcagctgcattattttaaatcatatgatatgcatgttccacacttttgctagtttat 25987730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 779 - 880
Target Start/End: Complemental strand, 25987440 - 25987339
Alignment:
Q  779 tgtttataattagttgaaaaatagttacgtgtaataaggagaataaggaatatgccaattttaagatagtcacattttttagtggtaggactaggagcta 878  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25987440 tgtttataattagttgaaaaatagttatgtgtaataaggagaataaggaatatgccaattttaagatagtcacattttttagtggtaggactaggagcta 25987341  T
Q  879 cc 880  Q
    ||    
T  25987340 cc 25987339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 25988321 - 25988210
Alignment:
Q  20 atacctatataggaggcaacttctacttattttgattcaaaacctattannnnnnnctcattgttatccctaggataaacctagtcgcaaataatacgta 119  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  25988321 atacctatataggaggcaacttctacttattttgattcacaacctattatttttttctcattgttatccctaggataaacctagtcgcaaataatacgta 25988222  T
Q  120 tcattgcatata 131  Q
    ||||||||||||    
T  25988221 tcattgcatata 25988210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 308 - 420
Target Start/End: Original strand, 27156386 - 27156497
Alignment:
Q  308 tggccaccatcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaatcaaaaatcgataattcaaaatttaaactac 407  Q
    ||||| ||||||||||||| |||||||||||||| ||||| |||||| ||| ||||||||||||||||  ||||||| ||| ||||||||||||||||||    
T  27156386 tggccgccatcaaaataaattaaaatatataaatcatatt-gcatactacacatttaagttgtaataagccaaaaattgatcattcaaaatttaaactac 27156484  T
Q  408 acaatacataaaa 420  Q
    | |||| ||||||    
T  27156485 ataatatataaaa 27156497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 277 - 362
Target Start/End: Original strand, 14200609 - 14200693
Alignment:
Q  277 cagtggcggagccggataaaaatatttgggatggccaccatcaaaataaactaaaatatataaattatatttgcatacaacatatt 362  Q
    ||||||||||||| || ||||||||||||||||||| |||||||||||||||| ||||||||||| || |||||||||||||||||    
T  14200609 cagtggcggagccagacaaaaatatttgggatggccgccatcaaaataaactagaatatataaataat-tttgcatacaacatatt 14200693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 315 - 422
Target Start/End: Original strand, 6059751 - 6059857
Alignment:
Q  315 catcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaatcaaaaatcgataattcaaaatttaaactacacaatac 414  Q
    |||||||||||| |||||||||||||| ||||| | ||| |||||||||||||| ||||||| ||||||||||| ||| ||||||||||||| | ||||     
T  6059751 catcaaaataaattaaaatatataaatcatatt-gtatataacatatttaagttataataaaccaaaaatcgatcatttaaaatttaaactatataatat 6059849  T
Q  415 ataaaatc 422  Q
    ||||||||    
T  6059850 ataaaatc 6059857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 314 - 425
Target Start/End: Original strand, 10894937 - 10895052
Alignment:
Q  314 ccatcaaaataaactaaaatata-----taaattatatttgcatacaacatatttaagttgtaataaatcaaaaatcgataattcaaaatttaaactaca 408  Q
    |||||||||||||||||||||||     ||||||||||| |||||||||| |||||| | |||||||| |||||| |||| |||||||||||||||||||    
T  10894937 ccatcaaaataaactaaaatataatatataaattatatt-gcatacaacacatttaattcgtaataaaccaaaaaccgatcattcaaaatttaaactaca 10895035  T
Q  409 caatacataaaatcgat 425  Q
     |||| ||||| |||||    
T  10895036 taatatataaagtcgat 10895052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 276 - 388
Target Start/End: Original strand, 14113862 - 14113973
Alignment:
Q  276 tcagtggcggagccggataaaaatatttgggatggccaccatcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataa 375  Q
    |||||||| ||||| || |||||  |||||||| ||| |||||||||||||||||||||||||||| ||| ||||||| |||| |||||||| |||||||    
T  14113862 tcagtggcagagccagacaaaaaagtttgggatcgccgccatcaaaataaactaaaatatataaatcata-ttgcatagaacacatttaagtagtaataa 14113960  T
Q  376 atcaaaaatcgat 388  Q
    |  ||||||||||    
T  14113961 actaaaaatcgat 14113973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 279 - 416
Target Start/End: Complemental strand, 97496 - 97362
Alignment:
Q  279 gtggcggagccggataaaaatatttgggatggccaccatcaaaa-taaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaat 377  Q
    ||||||||| | || |||| | |||||||||||| |||| |||| || |||||||||||||||| ||| || ||||||||||||||||||   ||||||     
T  97496 gtggcggagtcagacaaaattgtttgggatggcctccataaaaaatagactaaaatatataaatcatactt-catacaacatatttaagt---aataaac 97401  T
Q  378 caaaaatcgataattcaaaatttaaactacacaatacat 416  Q
    ||||||||||| |||||||||||||| | || |||||||    
T  97400 caaaaatcgatcattcaaaatttaaagtgcataatacat 97362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 320 - 377
Target Start/End: Original strand, 31709567 - 31709623
Alignment:
Q  320 aaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaat 377  Q
    |||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||    
T  31709567 aaataaactaaaatatataaatcatatt-gcatacaacaaatttaagttgtaataaat 31709623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 347 - 425
Target Start/End: Complemental strand, 17750126 - 17750048
Alignment:
Q  347 ttgcatacaacatatttaagttgtaataaatcaaaaatcgataattcaaaatttaaactacacaatacataaaatcgat 425  Q
    ||||||||||||||||||||||  ||||||| |||||| ||| ||||||||||| || |||| |||| ||||| |||||    
T  17750126 ttgcatacaacatatttaagttaaaataaattaaaaattgatcattcaaaatttgaagtacataatatataaattcgat 17750048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 275 - 348
Target Start/End: Complemental strand, 32505146 - 32505072
Alignment:
Q  275 atcagtggcggagccggataaaaatatttgggatggccaccat-caaaataaactaaaatatataaattatattt 348  Q
    ||||||||||||||| || |||| | |||||||||||| ||||  |||||| |||||||||||||||| ||||||    
T  32505146 atcagtggcggagccagacaaaattgtttgggatggccgccataaaaaatagactaaaatatataaatcatattt 32505072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 25529198 - 25529127
Alignment:
Q  175 atttcattgcagtagttgtattactcattggtttttattcttctattttataagttacatttactttcagta 246  Q
    |||||||||| || ||||| |||||  || ||||||||||| |||||||||||| |||||||| || |||||    
T  25529198 atttcattgcggtggttgttttactgtttagtttttattctactattttataagatacatttaattacagta 25529127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 4e-59; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 667 - 875
Target Start/End: Original strand, 37789967 - 37790174
Alignment:
Q  667 ataaactcaccattctcctccatcacattctaaccagaatccccctgaattctggtttctttgattgtaattttagaatgtgcagcgaacataatcatta 766  Q
    |||||||| |||||||||| |||||||| | ||   ||||||||||||||||||||||||||||||||||||||| |||||||| | |||| ||||||||    
T  37789967 ataaactcgccattctccttcatcacatcccaatt-gaatccccctgaattctggtttctttgattgtaattttataatgtgcaacaaacagaatcatta 37790065  T
Q  767 tctttcatgcagtgtttataattagttgaaaaatagttacgtgtaataaggagaataaggaatatgccaattttaagatagtcacattttttagtggtag 866  Q
    ||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| | || ||  |||||||| |||||| |    
T  37790066 tctttcatgaattgtttataattagttgaaaaatagttacgtgtaaaaaggagaataaggaatatgccagtttcatgaaagctacatttttgagtggtgg 37790165  T
Q  867 gactaggag 875  Q
    |||||||||    
T  37790166 gactaggag 37790174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 277 - 426
Target Start/End: Complemental strand, 37126877 - 37126731
Alignment:
Q  277 cagtggcggagccggataaaaatatttgggatggccaccatcaaaa-taaactaaaatatataaattatatttgcatacaacatatttaagttgtaataa 375  Q
    ||||||||||||| || |||| | |||||||||||| |||| |||| || |||||||||||||||| |||||| ||||||||||||||||||   |||||    
T  37126877 cagtggcggagccagacaaaattgtttgggatggccgccataaaaaatagactaaaatatataaatcatattt-catacaacatatttaagt---aataa 37126782  T
Q  376 atcaaaaatcgataattcaaaatttaaactacacaatacataaaatcgata 426  Q
    | ||||||||||| |||||||||||||| | || ||||||| |||||||||    
T  37126781 accaaaaatcgatcattcaaaatttaaagtgcataatacatcaaatcgata 37126731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 313 - 408
Target Start/End: Original strand, 17264465 - 17264564
Alignment:
Q  313 accatcaaaataaactaaaatata-----taaattatatttgcatacaacatatttaagttgtaataaatcaaaaatcgataattcaaaatttaaactac 407  Q
    ||||||||||||||||||||||||     ||||||||||| | |||||||| |||||||| ||||||||||||||| |||| ||||||||||||||||||    
T  17264465 accatcaaaataaactaaaatataatatataaattatatt-gtatacaacacatttaagtcgtaataaatcaaaaaccgatcattcaaaatttaaactac 17264563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 314 - 413
Target Start/End: Complemental strand, 8363947 - 8363849
Alignment:
Q  314 ccatcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaatcaaaaatcgataattcaaaatttaaactacacaata 413  Q
    |||||||||||||||||||||||||||| |||||   | |||||| |||||||| || ||||| ||||||||||| ||||||||||||||||||| ||||    
T  8363947 ccatcaaaataaactaaaatatataaatcatattaa-acacaacacatttaagtcgttataaaccaaaaatcgatcattcaaaatttaaactacataata 8363849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 316 - 425
Target Start/End: Complemental strand, 18295289 - 18295182
Alignment:
Q  316 atcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaatcaaaaatcgataattcaaaatttaaactacacaataca 415  Q
    |||||||||||||||  ||||||| ||||||| | |||||| | |||||||| ||||||||| |||||||||| ||||||||||||||||||| |||| |    
T  18295289 atcaaaataaactaatgtatataa-ttatatt-gtatacaatacatttaagtagtaataaataaaaaatcgatcattcaaaatttaaactacataatata 18295192  T
Q  416 taaaatcgat 425  Q
    |||| |||||    
T  18295191 taaagtcgat 18295182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 301 - 403
Target Start/End: Complemental strand, 19341195 - 19341096
Alignment:
Q  301 tttgggatggccaccatcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaatcaaaaatcgataattcaaaattt 400  Q
    |||||||||||||| |||| ||||||| ||||||||| ||| |||||    || |||| ||||||||||||||||||||||||||||| |||| ||||||    
T  19341195 tttgggatggccacaatcagaataaacaaaaatatatgaatcatattg---tataacacatttaagttgtaataaatcaaaaatcgatcattccaaattt 19341099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 511 - 649
Target Start/End: Original strand, 37789773 - 37789927
Alignment:
Q  511 cttccatttgctgcaatac---tatcttctaaatttttgtatactaattgctgcaagtatatttg------ataaactaatgaaatttagagttccaa-- 599  Q
    |||||| ||||||||||||   | ||| ||| |||||||| ||||||||||||||||||||||||      |||| ||||||||||||||||||||||      
T  37789773 cttccaattgctgcaatacccatctctgctatatttttgtttactaattgctgcaagtatatttgcatttgataacctaatgaaatttagagttccaaat 37789872  T
Q  600 -----tacttcatcaacgcagttgcattattttaaatcatatgatatgcatgttc 649  Q
         |||| |||||| |||| |||||||||||||||| |||||||||| |||||    
T  37789873 tccaatactacatcaatgcagctgcattattttaaatcttatgatatgcttgttc 37789927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 315 - 377
Target Start/End: Complemental strand, 380835 - 380774
Alignment:
Q  315 catcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaat 377  Q
    ||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||    
T  380835 catcaaaataaactaaaatatataaatcata-ttgcatacaacaaatttaagttgtaataaat 380774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 540 - 603
Target Start/End: Original strand, 37779954 - 37780017
Alignment:
Q  540 atttttgtatactaattgctgcaagtatatttgataaactaatgaaatttagagttccaatact 603  Q
    |||||||||||||||||| |||||| || | ||||||||||||| |||||||||||||||||||    
T  37779954 atttttgtatactaattgttgcaagcatgtatgataaactaatggaatttagagttccaatact 37780017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 277 - 347
Target Start/End: Complemental strand, 21626506 - 21626436
Alignment:
Q  277 cagtggcggagccggataaaaatatttgggatggccaccatcaaaataaactaaaatatataaattatatt 347  Q
    ||||||||||| | || ||||| ||||||| ||| |  ||||||||||||||||||||||||||| |||||    
T  21626506 cagtggcggagtcagacaaaaaaatttggggtggacgtcatcaaaataaactaaaatatataaatcatatt 21626436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 328 - 408
Target Start/End: Complemental strand, 3091516 - 3091439
Alignment:
Q  328 taaaatatataaattatatttgcatacaacatatttaagttgtaataaatcaaaaatcgataattcaaaatttaaactaca 408  Q
    |||||||||||||| ||||| | ||||| |||  |||||||||||||||  |||| ||||| |||||||||||||||||||    
T  3091516 taaaatatataaatgatatt-gaatacatcat--ttaagttgtaataaacaaaaattcgatcattcaaaatttaaactaca 3091439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 371 - 425
Target Start/End: Complemental strand, 31422121 - 31422067
Alignment:
Q  371 aataaatcaaaaatcgataattcaaaatttaaactacacaatacataaaatcgat 425  Q
    |||||| |||||||| || ||||||||||||||||||| |||| ||||| |||||    
T  31422121 aataaaccaaaaatcaatcattcaaaatttaaactacataatatataaagtcgat 31422067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 78; Significance: 7e-36; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 277 - 426
Target Start/End: Original strand, 11736 - 11884
Alignment:
Q  277 cagtggcggagccggataaaaatatttgggatggccaccatcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaa 376  Q
    ||||||||||||| || |||||  |||||| ||||| | || ||||||||||||||||||||||| ||||| ||||| |||| |||||||||||||||||    
T  11736 cagtggcggagccagacaaaaaggtttggggtggccgcaattaaaataaactaaaatatataaatcatatt-gcatataacacatttaagttgtaataaa 11834  T
Q  377 tcaaaaatcgataattcaaaatttaaactacacaatacataaaatcgata 426  Q
     |||||| |||| ||||||||||||||||||| |||| ||||||||||||    
T  11835 ccaaaaaacgatcattcaaaatttaaactacataatatataaaatcgata 11884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 7e-33; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 293 - 425
Target Start/End: Original strand, 19662989 - 19663120
Alignment:
Q  293 taaaaatatttgggatggccaccatcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaatcaaaaatcgataatt 392  Q
    |||||| | ||||| ||||| | ||||||||||||||||||||||||  |||||| | |||||||| ||||||||||||||||||||||||||||| |||    
T  19662989 taaaaaaaattggggtggccgctatcaaaataaactaaaatatataatctatatt-gtatacaacacatttaagttgtaataaatcaaaaatcgattatt 19663087  T
Q  393 caaaatttaaactacacaatacataaaatcgat 425  Q
    |||||||||||||||| |||| ||||| |||||    
T  19663088 caaaatttaaactacataatatataaagtcgat 19663120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 317 - 425
Target Start/End: Complemental strand, 37259366 - 37259259
Alignment:
Q  317 tcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaatcaaaaatcgataattcaaaatttaaactacacaatacat 416  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||| ||||| ||||||||| ||||||||  |||||||    
T  37259366 tcaaaataaactaaaatatataaatcatatt-gcatacaacatatttaagttgtaataaaccaaaagtcgatcattcaaaatgtaaactacgtaatacat 37259268  T
Q  417 aaaatcgat 425  Q
    ||| |||||    
T  37259267 aaagtcgat 37259259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 19647226 - 19647101
Alignment:
Q  301 tttgggatggccaccatcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaa-tcaaaaatcgataattcaaaatt 399  Q
    |||||| || || |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||   |||||||| | ||||||||||    
T  19647226 tttggggtgcccgccatcaaaataaactaaaatatataaattata-ttgcatacaacacatttaagttgtaataaacaaaaaaatcgttcattcaaaatt 19647128  T
Q  400 taaactacacaatacataaaatcgata 426  Q
    ||||||||| |||  ||||||||||||    
T  19647127 taaactacataatgtataaaatcgata 19647101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 277 - 425
Target Start/End: Original strand, 35634916 - 35635063
Alignment:
Q  277 cagtggcggagccggataaaaatatttgggatggccaccatcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaa 376  Q
    ||||||||||| | || |||||  |||||| ||||  | || ||||||||||||||||||||||| ||||| ||||| |||| |||||||||||||||||    
T  35634916 cagtggcggagtcagacaaaaaggtttggggtggctgcaattaaaataaactaaaatatataaatcatatt-gcatataacacatttaagttgtaataaa 35635014  T
Q  377 tcaaaaatcgataattcaaaatttaaactacacaatacataaaatcgat 425  Q
     |||||| |||| ||||||||||||||||||| |||| ||||| |||||    
T  35635015 ccaaaaaacgatcattcaaaatttaaactacataatatataaagtcgat 35635063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 306 - 404
Target Start/End: Complemental strand, 38352204 - 38352107
Alignment:
Q  306 gatggccaccatcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaatcaaaaatcgataattcaaaatttaaac 404  Q
    ||||||| |||| ||||||||||||||||||| ||| ||||| |||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||    
T  38352204 gatggccgccattaaaataaactaaaatatatgaatcatatt-gcatacaacacatttaagttgtaataaaccaaaaatcgatcattcaaaatttaaac 38352107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 278 - 425
Target Start/End: Original strand, 19676788 - 19676935
Alignment:
Q  278 agtggcggagccggataaaaatatttgggatggccaccatcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaat 377  Q
    ||||| |||||| || ||||| | ||||| ||||| | |||||||||||||||||||||||| ||||| |||| ||||||| |||||||||||||||||     
T  19676788 agtggtggagccagacaaaaaaaattggggtggccgctatcaaaataaactaaaatatataatttata-ttgcgtacaacacatttaagttgtaataaac 19676886  T
Q  378 caaaaatcgat-aattcaaaatttaaactacacaatacataaaatcgat 425  Q
    ||||||||| | |||  ||||||||||||||| |||| ||||| |||||    
T  19676887 caaaaatcggtcaatcaaaaatttaaactacataatatataaagtcgat 19676935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 306 - 406
Target Start/End: Complemental strand, 11776167 - 11776070
Alignment:
Q  306 gatggccaccatcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaatcaaaaatcgataattcaaaatttaaact 405  Q
    ||||||| |||||||||||||||||||||||||||  ||||| | |||| |  ||||||| |||||||||||||||||||||| ||||||||||||||||    
T  11776167 gatggccgccatcaaaataaactaaaatatataaaagatatt-gtatacga--tatttaatttgtaataaatcaaaaatcgatcattcaaaatttaaact 11776071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 277 - 425
Target Start/End: Original strand, 38394981 - 38395124
Alignment:
Q  277 cagtggcggagccggataaaaatatttgggatggccaccatcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaa 376  Q
    ||||||||||||| || |||||  |||||| ||||| | || ||||||||||||||||||||||| ||| ||||||| |||| ||||||||    |||||    
T  38394981 cagtggcggagccagacaaaaaggtttggggtggccgcaattaaaataaactaaaatatataaatcata-ttgcatataacacatttaagt----ataaa 38395075  T
Q  377 tcaaaaatcgataattcaaaatttaaactacacaatacataaaatcgat 425  Q
      ||||| |||| ||||||||||||||||||| |||| ||||| |||||    
T  38395076 ctaaaaaacgatcattcaaaatttaaactacataatatataaagtcgat 38395124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 301 - 377
Target Start/End: Original strand, 34438388 - 34438463
Alignment:
Q  301 tttgggatggccaccatcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaat 377  Q
    |||||| ||||| || ||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||    
T  34438388 tttggggtggccgccttcaaaataaactaaaatatataaatcata-ttgcatacaacaaatttaagttgtaataaat 34438463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 277 - 362
Target Start/End: Original strand, 3781277 - 3781361
Alignment:
Q  277 cagtggcggagccggataaaaatatttgggatggccaccatcaaaataaactaaaatatataaattatatttgcatacaacatatt 362  Q
    |||||||||| || || ||||||||||||||||||| |||||||||||||||| |||||||||||  | |||||||| ||||||||    
T  3781277 cagtggcggaaccagacaaaaatatttgggatggccgccatcaaaataaactagaatatataaatcgt-tttgcatataacatatt 3781361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 280 - 377
Target Start/End: Complemental strand, 7349666 - 7349570
Alignment:
Q  280 tggcggagccggataaaaatatttgggatggccaccatcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaat 377  Q
    |||||||||| || |||||  ||| ||||| || |||||||||||||||||||||||||||| ||| ||| |||||||| |||||| |||||||||||    
T  7349666 tggcggagccagacaaaaaagtttaggatgaccgccatcaaaataaactaaaatatataaatcata-ttgtatacaacacatttaacttgtaataaat 7349570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 319 - 408
Target Start/End: Original strand, 42740241 - 42740328
Alignment:
Q  319 aaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaatcaaaaatcgataattcaaaatttaaactaca 408  Q
    |||| |||||||||||||||||| ||||| |||||||||| ||| ||||  |||||||  |||||||||| |||||||||||||||||||    
T  42740241 aaaaaaaactaaaatatataaatcatatt-gcatacaacacatt-aagtcataataaacaaaaaatcgatcattcaaaatttaaactaca 42740328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 347 - 410
Target Start/End: Complemental strand, 29086347 - 29086284
Alignment:
Q  347 ttgcatacaacatatttaagttgtaataaatcaaaaatcgataattcaaaatttaaactacaca 410  Q
    ||||||||||||||||||||| |||||||| ||||||  ||| |||||||||||| ||||||||    
T  29086347 ttgcatacaacatatttaagtcgtaataaaccaaaaactgatcattcaaaatttatactacaca 29086284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 277 - 338
Target Start/End: Original strand, 13626766 - 13626827
Alignment:
Q  277 cagtggcggagccggataaaaatatttgggatggccaccatcaaaataaactaaaatatata 338  Q
    ||||||||||||| || ||||||||||| | |||||  ||||||||||||||||||||||||    
T  13626766 cagtggcggagccagacaaaaatatttgaggtggccgtcatcaaaataaactaaaatatata 13626827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 277 - 377
Target Start/End: Original strand, 29556788 - 29556887
Alignment:
Q  277 cagtggcggagccggataaaaatatttgggatggccaccatcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaa 376  Q
    ||||||| ||||| || |||||  |||||  || || |||||||||||||| |||| ||| |||| || || |||||||||| |||||||||||||||||    
T  29556788 cagtggcagagccagacaaaaaagtttggagtgaccgccatcaaaataaaccaaaagataaaaatcatgtt-gcatacaacaaatttaagttgtaataaa 29556886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 370 - 408
Target Start/End: Original strand, 21744499 - 21744537
Alignment:
Q  370 taataaatcaaaaatcgataattcaaaatttaaactaca 408  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  21744499 taataaaccaaaaatcgattattcaaaatttaaactaca 21744537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 3e-32; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 317 - 408
Target Start/End: Original strand, 51064663 - 51064753
Alignment:
Q  317 tcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaatcaaaaatcgataattcaaaatttaaactaca 408  Q
    ||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  51064663 tcaaaataaactaaaatatataaattatatt-gcatacaatacatttaagttgtaataaatcaaaaatcgatcattcaaaatttaaactaca 51064753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 314 - 419
Target Start/End: Complemental strand, 27133239 - 27133135
Alignment:
Q  314 ccatcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaatcaaaaatcgataattcaaaatttaaactacacaata 413  Q
    |||| |||||||||||||||||||| || |||||   ||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||| ||||    
T  27133239 ccataaaaataaactaaaatatatagatcatattaa-atacaacatatttaagtcgtaataaatcaaaaaccgatcattcaaaatttaaactacataata 27133141  T
Q  414 cataaa 419  Q
     |||||    
T  27133140 tataaa 27133135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 277 - 425
Target Start/End: Original strand, 3288021 - 3288170
Alignment:
Q  277 cagtggcggagccggataaaaatatttgggatggccaccatcaaaa-taaactaaaa-tatataaattatatttgcatacaacatatttaagttgtaata 374  Q
    ||||||||||||| || |||||  |||||| ||||| ||||||||| |||||||||| ||||||||||||||| ||||| |||| |||||||||||||||    
T  3288021 cagtggcggagccagacaaaaaagtttggggtggccgccatcaaaaataaactaaaaatatataaattatatt-gcatataacacatttaagttgtaata 3288119  T
Q  375 aatcaaaaatcgataattcaaaatttaaactacacaatacataaaatcgat 425  Q
    || |||||||  || ||| ||||||||||| |||  ||| ||||| |||||    
T  3288120 aaccaaaaattaatcatttaaaatttaaaccacatgatatataaagtcgat 3288170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 319 - 421
Target Start/End: Complemental strand, 181669 - 181568
Alignment:
Q  319 aaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaatcaaaaatcgataattcaaaatttaaactacacaatacataa 418  Q
    |||| |||||||||||||||||| | ||| ||||| || | |||||||| |||||||| ||||||||||| ||||||||||||||||||| |||| ||||    
T  181669 aaaaaaaactaaaatatataaatcacatt-gcatataatacatttaagtcgtaataaaccaaaaatcgatcattcaaaatttaaactacataatatataa 181571  T
Q  419 aat 421  Q
    |||    
T  181570 aat 181568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 328 - 425
Target Start/End: Original strand, 47074391 - 47074486
Alignment:
Q  328 taaaatatataaattatatttgcatacaacatatttaagttgtaataaatcaaaaatcgataattcaaaatttaaactacacaatacataaaatcgat 425  Q
    |||||||||||||||||||| |||| ||||| |||||| |||||||||| ||||||| ||| ||||||||||||||||||| |||| ||||| |||||    
T  47074391 taaaatatataaattatatt-gcatgcaacacatttaa-ttgtaataaaccaaaaattgatcattcaaaatttaaactacataatatataaagtcgat 47074486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 332 - 425
Target Start/End: Complemental strand, 4692834 - 4692743
Alignment:
Q  332 atatataaattatatttgcatacaacatatttaagttgtaataaatcaaaaatcgataattcaaaatttaaactacacaatacataaaatcgat 425  Q
    |||||||||| |||||  ||||||||| ||||||||||||||||||||||||||||| |||| |||| ||||||||| |||| ||||| |||||    
T  4692834 atatataaatcatattc-catacaacacatttaagttgtaataaatcaaaaatcgatcattc-aaatgtaaactacataatatataaagtcgat 4692743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 301 - 376
Target Start/End: Original strand, 48491593 - 48491667
Alignment:
Q  301 tttgggatggccaccatcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaa 376  Q
    |||||||||||| |||||||||||||||||||||||||||| ||| |||  ||||||| | |||||||||||||||    
T  48491593 tttgggatggccgccatcaaaataaactaaaatatataaatcata-ttgtttacaacacacttaagttgtaataaa 48491667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 320 - 419
Target Start/End: Original strand, 16763868 - 16763966
Alignment:
Q  320 aaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaatcaaaaatcgataattcaaaatttaaactacacaatacataaa 419  Q
    |||||||| ||||||||||||| ||||| |||||||| | |||||||| |||||||| ||||||   ||  |||||||||||||||||| |||| |||||    
T  16763868 aaataaaccaaaatatataaatcatatt-gcatacaatacatttaagtcgtaataaaccaaaaacgaatcgttcaaaatttaaactacataatatataaa 16763966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 278 - 347
Target Start/End: Complemental strand, 51286731 - 51286662
Alignment:
Q  278 agtggcggagccggataaaaatatttgggatggccaccatcaaaataaactaaaatatataaattatatt 347  Q
    |||||||||| | || |||||  |||||||||||| |||| ||||||||||||||||||||||| |||||    
T  51286731 agtggcggagtcagacaaaaaagtttgggatggccgccatgaaaataaactaaaatatataaatcatatt 51286662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 360 - 419
Target Start/End: Complemental strand, 8920096 - 8920037
Alignment:
Q  360 atttaagttgtaataaatcaaaaatcgataattcaaaatttaaactacacaatacataaa 419  Q
    ||||||||||||||||| | ||| ||||| |||||||||||||| |||| ||||||||||    
T  8920096 atttaagttgtaataaaccgaaagtcgatcattcaaaatttaaattacataatacataaa 8920037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 315 - 376
Target Start/End: Complemental strand, 25537851 - 25537791
Alignment:
Q  315 catcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaa 376  Q
    |||||||||||| |||||||||||||||||| ||| ||| || | |||||||||||||||||    
T  25537851 catcaaaataaattaaaatatataaattata-ttgtatataaaacatttaagttgtaataaa 25537791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 379 - 426
Target Start/End: Original strand, 12307125 - 12307172
Alignment:
Q  379 aaaaatcgataattcaaaatttaaactacacaatacataaaatcgata 426  Q
    |||||||||| |||||||||||||| | || |||||||||||||||||    
T  12307125 aaaaatcgatcattcaaaatttaaagtgcataatacataaaatcgata 12307172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 318 - 376
Target Start/End: Original strand, 10800976 - 10801033
Alignment:
Q  318 caaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaa 376  Q
    |||||||||| ||||||||||||| ||| |||||||||| ||||||| || ||||||||    
T  10800976 caaaataaaccaaaatatataaatcata-ttgcatacaatatatttaggtcgtaataaa 10801033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 277 - 346
Target Start/End: Complemental strand, 26356174 - 26356105
Alignment:
Q  277 cagtggcggagccggataaaaatatttgggatggccaccatcaaaataaactaaaatatataaattatat 346  Q
    ||||||||||||| ||  ||||  |||||| ||||| | || ||||||||||||||||||||||| ||||    
T  26356174 cagtggcggagccagaccaaaacttttggggtggccgctataaaaataaactaaaatatataaatcatat 26356105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 7e-30; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 277 - 420
Target Start/End: Complemental strand, 43946487 - 43946345
Alignment:
Q  277 cagtggcggagccggataaaaatatttgggatggccaccatcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaa 376  Q
    ||||||| ||||| || |||||  |||||||| ||| |||||||||||||||||||||||||||| ||||| |  ||||||| ||||||||   ||||||    
T  43946487 cagtggcagagccagacaaaaaagtttgggatagccgccatcaaaataaactaaaatatataaatcatattggt-tacaacacatttaagtcaaaataaa 43946389  T
Q  377 tcaaaaatcgataattcaaaatttaaactacacaatacataaaa 420  Q
    |||||||||||| ||||||||||||||||||| |||| ||||||    
T  43946388 tcaaaaatcgatcattcaaaatttaaactacataatatataaaa 43946345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 276 - 426
Target Start/End: Original strand, 19971866 - 19972013
Alignment:
Q  276 tcagtggcggagccggataaaaatatttgggatggccaccatcaaaa-taaactaaaatatataaattatatttgcatacaacatatttaagttgtaata 374  Q
    |||||||||||| | || |||| | |||||||||||| |||| |||| || |||||||||||||||| |||||| ||||||||||||||||||   ||||    
T  19971866 tcagtggcggagtcagacaaaattgtttgggatggccgccataaaaaatagactaaaatatataaatcatattt-catacaacatatttaagt---aata 19971961  T
Q  375 aatcaaaaatcgataattcaaaatttaaactacacaatacataaaatcgata 426  Q
    || ||||||||||| |||||||||||||| | || |||||||||||||||||    
T  19971962 aaccaaaaatcgatcattcaaaatttaaagtgcataatacataaaatcgata 19972013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 277 - 406
Target Start/End: Complemental strand, 21496941 - 21496813
Alignment:
Q  277 cagtggcggagccggataaaaatatttgggatggccaccatcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaa 376  Q
    |||||||||||||  | |||||  ||||||||| |  |||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| |||||||    
T  21496941 cagtggcggagccaaacaaaaaagtttgggatgtctgccatcaaaataaactaaaatatataaatcatatt-gcatacaacacatttaagttttaataaa 21496843  T
Q  377 tcaaaaatcgataattcaaaatttaaacta 406  Q
     ||||||| ||| |||||||||||||||||    
T  21496842 ccaaaaattgatcattcaaaatttaaacta 21496813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 301 - 404
Target Start/End: Complemental strand, 55121426 - 55121324
Alignment:
Q  301 tttgggatggccaccatcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaatcaaaaatcgataattcaaaattt 400  Q
    |||||| ||||| ||||||||||||| |||||||||||||||||||| |||| ||||| |||||| |||||||||||||||||||||| ||||||||| |    
T  55121426 tttggggtggccgccatcaaaataaattaaaatatataaattatatt-gcatgcaacacatttaacttgtaataaatcaaaaatcgatcattcaaaatct 55121328  T
Q  401 aaac 404  Q
    ||||    
T  55121327 aaac 55121324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 275 - 425
Target Start/End: Original strand, 14195158 - 14195307
Alignment:
Q  275 atcagtggcggagccggataaaaatatttgggatggccaccatcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaata 374  Q
    ||||||||||||| | || |||||  |||||| || |  |||||||||||||||||||||||||||| ||||| |||||||||  |||||||||||||||    
T  14195158 atcagtggcggagtcagacaaaaaagtttggggtgactgccatcaaaataaactaaaatatataaatcatatt-gcatacaactcatttaagttgtaata 14195256  T
Q  375 aatcaaaaatcgataattcaaaatttaaactacacaatacataaaatcgat 425  Q
    ||  ||||||| || ||| ||||||||||||||| |||| ||||| |||||    
T  14195257 aactaaaaatcaatcatttaaaatttaaactacataatatataaagtcgat 14195307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 294 - 403
Target Start/End: Complemental strand, 54789102 - 54788994
Alignment:
Q  294 aaaaatatttgggatggccaccatcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaatcaaaaatcgataattc 393  Q
    ||||| ||||||||||| |  | ||||||||||||||||||||||||  ||||| | ||| |||||||||||||||||||||| ||||||||||| ||||    
T  54789102 aaaaaaatttgggatggtcgtcgtcaaaataaactaaaatatataaaccatatt-gaatataacatatttaagttgtaataaaccaaaaatcgatcattc 54789004  T
Q  394 aaaatttaaa 403  Q
    ||||||||||    
T  54789003 aaaatttaaa 54788994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 275 - 416
Target Start/End: Original strand, 8425165 - 8425303
Alignment:
Q  275 atcagtggcggagccggataaaaatatttgggatggccaccatcaaaa-taaactaaaatatataaattatatttgcatacaacatatttaagttgtaat 373  Q
    ||||||||||||| | || |||| | |||||||| ||| |||| |||| || |||||||||||||||| |||||| ||||||||||||||||||   |||    
T  8425165 atcagtggcggagtcagacaaaattgtttgggatagccgccataaaaaatagactaaaatatataaatcatattt-catacaacatatttaagt---aat 8425260  T
Q  374 aaatcaaaaatcgataattcaaaatttaaactacacaatacat 416  Q
    ||| ||||||||||| |||||||||||||| | || |||||||    
T  8425261 aaaccaaaaatcgatcattcaaaatttaaagtgcataatacat 8425303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 354 - 424
Target Start/End: Original strand, 38000464 - 38000534
Alignment:
Q  354 caacatatttaagttgtaataaatcaaaaatcgataattcaaaatttaaactacacaatacataaaatcga 424  Q
    ||||| ||||||||||||||| | ||||||||||| ||||||||||||||||||| |||| ||||| ||||    
T  38000464 caacacatttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataatatataaagtcga 38000534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 277 - 347
Target Start/End: Complemental strand, 7276741 - 7276672
Alignment:
Q  277 cagtggcggagccggataaaaatatttgggatggccaccatcaaaataaactaaaatatataaattatatt 347  Q
    ||||||||||||| || ||||| |||||||||||||   ||| |||||||||| ||||||||||| |||||    
T  7276741 cagtggcggagccagacaaaaaaatttgggatggccgttatc-aaataaactacaatatataaatcatatt 7276672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 277 - 346
Target Start/End: Complemental strand, 14835885 - 14835817
Alignment:
Q  277 cagtggcggagccggataaaaatatttgggatggccaccatcaaaataaactaaaatatataaattatat 346  Q
    ||||||||||||| || ||||| |  |||||||||| | |||||| ||||||||||||||||||| ||||    
T  14835885 cagtggcggagccagacaaaaaaaaatgggatggccgctatcaaa-taaactaaaatatataaatcatat 14835817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 3e-26; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 276 - 425
Target Start/End: Complemental strand, 16401308 - 16401160
Alignment:
Q  276 tcagtggcggagccggataaaaatatttgggatggccaccatcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataa 375  Q
    |||||| ||||||| || |||||  |||| | | ||| ||||||||||||| | |||||||||||| ||||| |||||||||| ||||||||||||||||    
T  16401308 tcagtgacggagccagacaaaaaagtttgaggtagcctccatcaaaataaagttaaatatataaatcatatt-gcatacaacacatttaagttgtaataa 16401210  T
Q  376 atcaaaaatcgataattcaaaatttaaactacacaatacataaaatcgat 425  Q
    | | ||||||||  ||||||||||||||||||| |||| ||||| |||||    
T  16401209 accgaaaatcgaacattcaaaatttaaactacataataaataaattcgat 16401160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 317 - 408
Target Start/End: Original strand, 24535093 - 24535183
Alignment:
Q  317 tcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaatcaaaaatcgataattcaaaatttaaactaca 408  Q
    |||||||||||||||||||||||||||||||  |||| |||| ||||||||||||||| | ||||||||||| |||||||||||||||||||    
T  24535093 tcaaaataaactaaaatatataaattatatta-catataacacatttaagttgtaatacaccaaaaatcgatcattcaaaatttaaactaca 24535183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 314 - 425
Target Start/End: Complemental strand, 44504964 - 44504854
Alignment:
Q  314 ccatcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaatcaaaaatcgataattcaaaatttaaactacacaata 413  Q
    ||||||||||||| |||||||||||||| |||||  ||||||||| |||||||| ||||||||||||||||| || ||| ||||||||||||||| ||||    
T  44504964 ccatcaaaataaattaaaatatataaatcatatta-catacaacacatttaagtcgtaataaatcaaaaatcaatcatttaaaatttaaactacataata 44504866  T
Q  414 cataaaatcgat 425  Q
     ||||| |||||    
T  44504865 tataaagtcgat 44504854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 316 - 413
Target Start/End: Complemental strand, 7114464 - 7114368
Alignment:
Q  316 atcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaatcaaaaatcgataattcaaaatttaaactacacaata 413  Q
    |||||||| ||||||||||||||||||||||| |||||||| | |||||||||||||||||  |||||||||| |||||||||||||| |||| ||||    
T  7114464 atcaaaatgaactaaaatatataaattatatt-gcatacaatacatttaagttgtaataaactaaaaatcgatcattcaaaatttaaattacataata 7114368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 316 - 425
Target Start/End: Original strand, 43335298 - 43335406
Alignment:
Q  316 atcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaatcaaaaatcgataattcaaaatttaaactacacaataca 415  Q
    |||||| ||||||||||||||| ||| ||||| |||||||||| ||||||||||||||| | |||||| |||| ||||||||||||||||||| |||| |    
T  43335298 atcaaagtaaactaaaatatatgaatcatatt-gcatacaacacatttaagttgtaatataccaaaaaccgatcattcaaaatttaaactacataatata 43335396  T
Q  416 taaaatcgat 425  Q
    |||| |||||    
T  43335397 taaagtcgat 43335406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 314 - 397
Target Start/End: Complemental strand, 27599743 - 27599661
Alignment:
Q  314 ccatcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaatcaaaaatcgataattcaaaa 397  Q
    ||||||||||||||||||||| |||||| ||||| |||||||| | ||||||||||||||||| ||| ||||||| ||||||||    
T  27599743 ccatcaaaataaactaaaataaataaatcatatt-gcatacaatacatttaagttgtaataaaccaataatcgatcattcaaaa 27599661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 323 - 397
Target Start/End: Original strand, 53816126 - 53816199
Alignment:
Q  323 taaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaatcaaaaatcgataattcaaaa 397  Q
    ||||||||||||||||||| |||||| |||||||||||||||| || ||||||| |||||| |||| ||||||||    
T  53816126 taaactaaaatatataaatcatattt-catacaacatatttaaattttaataaaccaaaaagcgatcattcaaaa 53816199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 277 - 347
Target Start/End: Complemental strand, 9816500 - 9816430
Alignment:
Q  277 cagtggcggagccggataaaaatatttgggatggccaccatcaaaataaactaaaatatataaattatatt 347  Q
    ||||||||||||| || |||||  |||||| || || |||||||||||||||||||||||||||| |||||    
T  9816500 cagtggcggagccagacaaaaaagtttggggtgaccgccatcaaaataaactaaaatatataaatcatatt 9816430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 334 - 426
Target Start/End: Complemental strand, 55405217 - 55405129
Alignment:
Q  334 atataaattatatttgcatacaacatatttaagttgtaataaatcaaaaatcgataattcaaaatttaaactacacaatacataaaatcgata 426  Q
    |||||||| |||||| ||||||||||||||||||   |||||| ||||||| ||| |||||||||||||| | || ||||||| |||||||||    
T  55405217 atataaatcatattt-catacaacatatttaagt---aataaaccaaaaattgatcattcaaaatttaaagtgcataatacatcaaatcgata 55405129  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 371 - 425
Target Start/End: Original strand, 37465935 - 37465989
Alignment:
Q  371 aataaatcaaaaatcgataattcaaaatttaaactacacaatacataaaatcgat 425  Q
    |||||| |||||||| || ||||||||||||||||||| |||| ||||| |||||    
T  37465935 aataaaccaaaaatcaatcattcaaaatttaaactacataatatataaagtcgat 37465989  T

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Target: chr2 (Bit Score: 62; Significance: 3e-26; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 280 - 413
Target Start/End: Complemental strand, 41318360 - 41318229
Alignment:
Q  280 tggcggagccggataaaaatatttgggatggccaccatcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaatca 379  Q
    |||||||| | || |||||  |||||| ||||| |||||||||||||||||||||||||||| ||| ||||||| |||| |||||||||||||||||  |    
T  41318360 tggcggagtcagacaaaaaagtttggggtggccgccatcaaaataaactaaaatatataaatcata-ttgcata-aacacatttaagttgtaataaacaa 41318263  T
Q  380 aaaatcgataattcaaaatttaaactacacaata 413  Q
    ||||||||| ||| ||||||||||||||| ||||    
T  41318262 aaaatcgatcatttaaaatttaaactacataata 41318229  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 316 - 425
Target Start/End: Original strand, 5885317 - 5885425
Alignment:
Q  316 atcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaatcaaaaatcgataattcaaaatttaaactacacaataca 415  Q
    ||||||||||||||||| |||| ||| ||||| |||||||||| ||||||||||||||||| |||||| | || ||||||||||||||||||| |||| |    
T  5885317 atcaaaataaactaaaacatatgaatcatatt-gcatacaacacatttaagttgtaataaaccaaaaaccaatcattcaaaatttaaactacataatata 5885415  T
Q  416 taaaatcgat 425  Q
    |||| |||||    
T  5885416 taaagtcgat 5885425  T

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Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 5088903 - 5088781
Alignment:
Q  301 tttgggatggccaccatcaaaa-taaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaatcaaaaatcgataattcaaaatt 399  Q
    |||||||||||| |||| |||| || |||||||||||||||| |||||| ||||||||||||||||||   |||||| ||||||||||| ||||||||||    
T  5088903 tttgggatggccgccataaaaaatagactaaaatatataaatcatattt-catacaacatatttaagt---aataaaccaaaaatcgatcattcaaaatt 5088808  T
Q  400 taaactacacaatacataaaatcgata 426  Q
    |||| | || ||||||| |||||||||    
T  5088807 taaagtgcataatacatcaaatcgata 5088781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 277 - 393
Target Start/End: Complemental strand, 43327865 - 43327750
Alignment:
Q  277 cagtggcggagccggataaaaatatttgggatggccaccatcaaaataa---actaaaatatataaattatatttgcatacaacatatttaagttgtaat 373  Q
    ||||||||||||| || |||| | |||||||||||| |||| |||| ||   |||||||||||||||| |||||| ||||||||||||||||   |||||    
T  43327865 cagtggcggagccagacaaaattgtttgggatggccgccataaaaaaaatagactaaaatatataaatcatattt-catacaacatatttaa---gtaat 43327770  T
Q  374 aaatcaaaaatcgataattc 393  Q
    ||| ||||||||||| ||||    
T  43327769 aaaccaaaaatcgatcattc 43327750  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 288 - 347
Target Start/End: Original strand, 9844715 - 9844774
Alignment:
Q  288 ccggataaaaatatttgggatggccaccatcaaaataaactaaaatatataaattatatt 347  Q
    ||||| ||||| ||||||| || || |||||||||||||||||||||||||||| |||||    
T  9844715 ccggacaaaaaaatttggggtgaccgccatcaaaataaactaaaatatataaatcatatt 9844774  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 19258370 - 19258416
Alignment:
Q  301 tttgggatggccaccatcaaaataaactaaaatatataaattatatt 347  Q
    |||| ||||| | |||||||||||||||||||||||||||| |||||    
T  19258370 tttgagatggtcgccatcaaaataaactaaaatatataaatcatatt 19258416  T

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Target: chr8 (Bit Score: 60; Significance: 4e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 276 - 419
Target Start/End: Complemental strand, 20099216 - 20099075
Alignment:
Q  276 tcagtggcggagccggataaaaatatttgggatggccaccatcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataa 375  Q
    |||||||||||| | | ||||||  |||||| ||| |  ||||||||||||||||||||||||| | ||||| |||||||| | |||||||||||||| |    
T  20099216 tcagtggcggagtcagctaaaaaagtttggggtggtcgtcatcaaaataaactaaaatatataattcatatt-gcatacaatacatttaagttgtaatga 20099118  T
Q  376 atcaaaaatcgataattcaaaatttaaactacacaatacataaa 419  Q
    ||||||||||||| |||||||| |||||||||| |||| |||||    
T  20099117 atcaaaaatcgatcattcaaaa-ttaaactacataatatataaa 20099075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 276 - 382
Target Start/End: Complemental strand, 32382443 - 32382338
Alignment:
Q  276 tcagtggcggagccggataaaaatatttgggatggccaccatcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataa 375  Q
    |||||||||||||| || ||||| ||||||| ||||| | |  |||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||    
T  32382443 tcagtggcggagccagacaaaaaaatttggggtggccgcaaa-aaaataaaataaaatatataaatcatatttgcatacaacacatttaagttgtaataa 32382345  T
Q  376 atcaaaa 382  Q
    | |||||    
T  32382344 accaaaa 32382338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 276 - 382
Target Start/End: Complemental strand, 32436398 - 32436293
Alignment:
Q  276 tcagtggcggagccggataaaaatatttgggatggccaccatcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataa 375  Q
    |||||||||||||| || ||||| ||||||| ||||| | |  |||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||    
T  32436398 tcagtggcggagccagacaaaaaaatttggggtggccgcaaa-aaaataaaataaaatatataaatcatatttgcatacaacacatttaagttgtaataa 32436300  T
Q  376 atcaaaa 382  Q
    | |||||    
T  32436299 accaaaa 32436293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 301 - 415
Target Start/End: Complemental strand, 18427866 - 18427753
Alignment:
Q  301 tttgggatggccaccatcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaatcaaaaatcgataattcaaaattt 400  Q
    |||||| ||| | ||||||||||||| |||||||| ||| | ||||| |||||||||| |||||| |||| ||||| |||||||| ||  ||||||||||    
T  18427866 tttggggtggtcgccatcaaaataaaataaaatatttaagtcatatt-gcatacaacacatttaacttgttataaaccaaaaatcaattgttcaaaattt 18427768  T
Q  401 aaactacacaataca 415  Q
    |||||||| ||||||    
T  18427767 aaactacataataca 18427753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 319 - 425
Target Start/End: Original strand, 35538694 - 35538799
Alignment:
Q  319 aaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaatcaaaaatcgataattcaaaatttaaactacacaatacataa 418  Q
    |||||| | |||||||||||||| ||| | |||||||||  ||||||||||||||||| || |||| ||  || |||| ||||||||||| |||||||||    
T  35538694 aaaatagattaaaatatataaataatact-gcatacaactcatttaagttgtaataaaccataaattgaatatgcaaagtttaaactacataatacataa 35538792  T
Q  419 aatcgat 425  Q
    | |||||    
T  35538793 agtcgat 35538799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 371 - 425
Target Start/End: Complemental strand, 33363843 - 33363789
Alignment:
Q  371 aataaatcaaaaatcgataattcaaaatttaaactacacaatacataaaatcgat 425  Q
    |||||| |||||||| || ||||||||||||||||||| |||| ||||| |||||    
T  33363843 aataaaccaaaaatcaatcattcaaaatttaaactacataatatataaagtcgat 33363789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 320 - 419
Target Start/End: Original strand, 7714 - 7812
Alignment:
Q  320 aaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaatcaaaaatcgataattcaaaatttaaactacacaatacataaa 419  Q
    |||||||| ||||||||||||| ||||| |||||||| | |||||||| |||||||| ||||||   ||  |||||||||||||||||| |||| |||||    
T  7714 aaataaaccaaaatatataaatcatatt-gcatacaatacatttaagtcgtaataaaccaaaaacgaatcgttcaaaatttaaactacataatatataaa 7812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 320 - 419
Target Start/End: Complemental strand, 3641 - 3543
Alignment:
Q  320 aaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaatcaaaaatcgataattcaaaatttaaactacacaatacataaa 419  Q
    |||||||| ||||||||||||| ||| | |||||||| | |||||||| |||||||| ||||||   ||  |||||||||||||||||| |||| |||||    
T  3641 aaataaaccaaaatatataaatcataat-gcatacaatacatttaagtcgtaataaaccaaaaacgaatcgttcaaaatttaaactacataatatataaa 3543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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