View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9823_low_3 (Length: 262)

Name: NF9823_low_3
Description: NF9823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9823_low_3
NF9823_low_3
[»] chr1 (8 HSPs)
chr1 (1-253)||(24592635-24592887)
chr1 (47-235)||(18577476-18577664)
chr1 (153-252)||(25379812-25379911)
chr1 (136-183)||(18748960-18749007)
chr1 (83-197)||(17317841-17317956)
chr1 (141-197)||(20408946-20409002)
chr1 (147-197)||(16969124-16969174)
chr1 (153-203)||(22045101-22045151)
[»] chr7 (7 HSPs)
chr7 (41-253)||(19018232-19018444)
chr7 (116-234)||(30239191-30239310)
chr7 (50-234)||(29699073-29699258)
chr7 (15-86)||(23008657-23008728)
chr7 (131-197)||(10203998-10204065)
chr7 (164-259)||(10375657-10375752)
chr7 (136-197)||(1375985-1376046)
[»] chr5 (7 HSPs)
chr5 (141-253)||(20057648-20057760)
chr5 (160-252)||(25917471-25917563)
chr5 (141-234)||(18957961-18958054)
chr5 (141-234)||(16700528-16700621)
chr5 (141-239)||(18338917-18339015)
chr5 (145-197)||(24660314-24660366)
chr5 (141-181)||(22846743-22846783)
[»] chr3 (8 HSPs)
chr3 (50-253)||(13885230-13885434)
chr3 (83-253)||(5555059-5555230)
chr3 (141-253)||(19305676-19305788)
chr3 (160-234)||(23295502-23295576)
chr3 (136-183)||(13904653-13904700)
chr3 (86-196)||(16973660-16973771)
chr3 (116-183)||(7653996-7654064)
chr3 (165-197)||(24698346-24698378)
[»] chr8 (4 HSPs)
chr8 (133-253)||(16648279-16648400)
chr8 (146-245)||(17815910-17816009)
chr8 (83-196)||(24464212-24464326)
chr8 (153-234)||(24375279-24375360)
[»] chr4 (1 HSPs)
chr4 (50-234)||(10491876-10492061)
[»] chr6 (2 HSPs)
chr6 (123-253)||(24005906-24006037)
chr6 (153-197)||(20402807-20402851)
[»] chr2 (3 HSPs)
chr2 (131-203)||(17979929-17980002)
chr2 (145-234)||(24373360-24373449)
chr2 (117-253)||(29842323-29842459)
[»] scaffold0008 (1 HSPs)
scaffold0008 (119-239)||(54724-54844)
[»] scaffold0103 (1 HSPs)
scaffold0103 (165-253)||(39938-40026)


Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 24592887 - 24592635
Alignment:
Q  1 ttgaattattctggcttggtttttggttaagtggatcgaatcacacttctttgactcgtatcagccttcatctaggggcatatgaatcgattcaaatata 100  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24592887 ttgaattcttctggcttggtttttggttaagtgaatcgaatcacacttctttgactcgtatcagccttcatctaggggcatatgaatcgattcaaatata 24592788  T
Q  101 gtatgattcgcatcgatcttcatggctcaacttgcttgtctttagctgtctaaatcgaatcacacatttagtgaatcgattcattatgttgtttttgacc 200  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24592787 gtatgattcgcatcaatcttcatggctcagcttgcttgtctttagctgtctaaatcgaatcacacatttagtgagtcgattcattatgttgtttttgacc 24592688  T
Q  201 aaatatttgatcttgccacccttttgtatatatattcatatcctcgtaacacc 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24592687 aaatatttgatcttgccacccttttgtatatatattcatatcctcgtaacacc 24592635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 47 - 235
Target Start/End: Complemental strand, 18577664 - 18577476
Alignment:
Q  47 ttctttgactcgtatcagccttcatctaggggcatatgaatcgattcaaatatagtatgattcgcatcgatcttcatggctcaacttgcttgtctttagc 146  Q
    |||||||| || ||||| ||||||||| |||  |||||||| |||||||||||||| ||||||| ||| |||||||| | ||| ||||||||||||||||    
T  18577664 ttctttgaatcatatcaaccttcatctggggaaatatgaatagattcaaatatagtttgattcgtatcaatcttcataggtcagcttgcttgtctttagc 18577565  T
Q  147 tgtctaaatcgaatcacacatttagtgaatcgattcattatgttgtttttgaccaaatatttgatcttgccacccttttgtatatatat 235  Q
    ||||| ||| || ||||||||||||||| |||||||||||||||||||||| |||||  ||||  |||||||| ||||| |||||||||    
T  18577564 tgtctgaatggattcacacatttagtgactcgattcattatgttgtttttggccaaaattttgcacttgccactcttttctatatatat 18577476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 153 - 252
Target Start/End: Original strand, 25379812 - 25379911
Alignment:
Q  153 aatcgaatcacacatttagtgaatcgattcattatgttgtttttgaccaaatatttgatcttgccacccttttgtatatatattcatatcctcgtaacac 252  Q
    |||||||||||||||| |||||||||||||| ||  || |||||| |||||   |||  |||||||||||||| |||||||| |||||||||| ||||||    
T  25379812 aatcgaatcacacattaagtgaatcgattcaatacattatttttggccaaaatattgcacttgccacccttttctatatatactcatatcctcttaacac 25379911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 18748960 - 18749007
Alignment:
Q  136 ttgtctttagctgtctaaatcgaatcacacatttagtgaatcgattca 183  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||    
T  18748960 ttgtctttagctgtctaaattgattcacacatttagtgaatcgattca 18749007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 197
Target Start/End: Complemental strand, 17317956 - 17317841
Alignment:
Q  83 tgaatcgattcaaatatagtatgattcgcatcgatcttcatggctcaacttgcttgtcttt-agctgtctaaatcgaatcacacatttagtgaatcgatt 181  Q
    |||||| |||||||||| || ||||  | ||| |||||||| | ||  || |||||||||| |||||||| ||| || |||  |||||||||||||||||    
T  17317956 tgaatcaattcaaatatggtctgatatgtatcaatcttcatagttcttctggcttgtcttttagctgtctgaattgattcaagcatttagtgaatcgatt 17317857  T
Q  182 cattatgttgtttttg 197  Q
    || |||||||||||||    
T  17317856 cactatgttgtttttg 17317841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 20409002 - 20408946
Alignment:
Q  141 tttagctgtctaaatcgaatcacacatttagtgaatcgattcattatgttgtttttg 197  Q
    ||||||||| | |||||| ||||||||||| |||||| ||||| |||||||||||||    
T  20409002 tttagctgtttgaatcgattcacacatttattgaatctattcactatgttgtttttg 20408946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 16969124 - 16969174
Alignment:
Q  147 tgtctaaatcgaatcacacatttagtgaatcgattcattatgttgtttttg 197  Q
    ||||| |||||| |||| |||||||||||||||||||  ||||||||||||    
T  16969124 tgtctgaatcgattcactcatttagtgaatcgattcaccatgttgtttttg 16969174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 22045101 - 22045151
Alignment:
Q  153 aatcgaatcacacatttagtgaatcgattcattatgttgtttttgaccaaa 203  Q
    |||||| ||| ||||| |||||||||||||| |||||| ||||||||||||    
T  22045101 aatcgattcatacattaagtgaatcgattcactatgttatttttgaccaaa 22045151  T

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Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 41 - 253
Target Start/End: Original strand, 19018232 - 19018444
Alignment:
Q  41 tcacacttctttgactcgtatcagccttcatctaggggcatatgaatcgattcaaatatagtatgattcgcatcgatcttcatggctcaacttgcttgtc 140  Q
    |||||||| ||||| || |||||  |||||| | |||||||||||||||||||| || | || ||||| | |||  ||||||||||||  |||| |||||    
T  19018232 tcacacttgtttgaatcatatcaaacttcatttgggggcatatgaatcgattcacattttgtttgatttgtatcagtcttcatggctcggcttgtttgtc 19018331  T
Q  141 tttagctgtctaaatcgaatcacacatttagtgaatcgattcattatgttgtttttgaccaaatatttgatcttgccacccttttgtatatatattcata 240  Q
    ||| | ||||| |||||||||||||||| |||||||||||||| ||| ||||||||| |||||| | ||  ||| |||| |||   |||||||| |||||    
T  19018332 ttttgttgtctgaatcgaatcacacattaagtgaatcgattcactatattgtttttggccaaatttgtgcacttaccactcttcactatatatactcata 19018431  T
Q  241 tcctcgtaacacc 253  Q
    | ||| |||||||    
T  19018432 ttctcataacacc 19018444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 234
Target Start/End: Complemental strand, 30239310 - 30239191
Alignment:
Q  116 atcttcatggctcaacttgcttgtc-tttagctgtctaaatcgaatcacacatttagtgaatcgattcattatgttgtttttgaccaaatatttgatctt 214  Q
    |||||||| | ||| || ||||||| ||||||||||| |||||| ||||||||| ||||||||||||||  |||||||||||| |  ||  ||||  |||    
T  30239310 atcttcatagttcatctggcttgtcatttagctgtctgaatcgattcacacattaagtgaatcgattcaccatgttgtttttggctgaaattttgcactt 30239211  T
Q  215 gccacccttttgtatatata 234  Q
    ||||||||||| ||||||||    
T  30239210 gccacccttttctatatata 30239191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 234
Target Start/End: Original strand, 29699073 - 29699258
Alignment:
Q  50 tttgactcgtatcagccttcatctaggggcatatgaatcgattcaaatatagtatgattcgcatcgatcttcatggctcaacttgcttgtc-tttagctg 148  Q
    ||||| ||||||||  ||||||||||||  || ||||||||||||| |   || |||| ||  || |||||||| | ||| || ||||||| ||||| ||    
T  29699073 tttgaatcgtatcaatcttcatctagggagatttgaatcgattcaatttgtgtctgatgcgtgtcaatcttcattgttcatctggcttgtcatttagttg 29699172  T
Q  149 tctaaatcgaatcacacatttagtgaatcgattcattatgttgtttttgaccaaatatttgatcttgccacccttttgtatatata 234  Q
    ||| |||||| ||||||| | |||||||||||||| | |||||| |||| || ||| ||||  ||| |||||||||| ||||||||    
T  29699173 tctgaatcgattcacacagtaagtgaatcgattcactctgttgtatttggccgaatttttgcactttccacccttttctatatata 29699258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 23008657 - 23008728
Alignment:
Q  15 cttggtttttggttaagtggatcgaatcacacttctttgactcgtatcagccttcatctaggggcatatgaa 86  Q
    ||||||||||||||   || |||||||||||||||||||| |||||||| ||||||||| |||| |||||||    
T  23008657 cttggtttttggttggttgaatcgaatcacacttctttgaatcgtatcaaccttcatctgggggaatatgaa 23008728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 10204065 - 10203998
Alignment:
Q  131 cttgcttgtcttta-gctgtctaaatcgaatcacacatttagtgaatcgattcattatgttgtttttg 197  Q
    |||||||||||||  ||| ||| |||||| ||||||||| |||||||||||||||| |||||||||||    
T  10204065 cttgcttgtctttttgctatctgaatcgattcacacattaagtgaatcgattcattttgttgtttttg 10203998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 259
Target Start/End: Original strand, 10375657 - 10375752
Alignment:
Q  164 acatttagtgaatcgattcattatgttgttttt-gaccaaatatttgatcttgccacccttttgtatatatattcatatcctcgtaacaccaaactc 259  Q
    ||||||||||||||||||||  ||||||||||| | | |||| ||||  | |||||||||||| ||||||||||||  ||||| ||||||| |||||    
T  10375657 acatttagtgaatcgattcaacatgttgttttttgtcgaaat-tttgcacctgccacccttttctatatatattcacttcctcataacacccaactc 10375752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 1375985 - 1376046
Alignment:
Q  136 ttgtctttagctgtctaaatcgaatcacacatttagtgaatcgattcattatgttgtttttg 197  Q
    |||||||| ||| ||| |||||| |||| |||||||||||||||||||  |||||| |||||    
T  1375985 ttgtcttttgctatctgaatcgattcactcatttagtgaatcgattcaccatgttgattttg 1376046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 141 - 253
Target Start/End: Complemental strand, 20057760 - 20057648
Alignment:
Q  141 tttagctgtctaaatcgaatcacacatttagtgaatcgattcattatgttgtttttgaccaaatatttgatcttgccacccttttgtatatatattcata 240  Q
    ||||||||||| |||||| ||||||||||||| | |||||||||| ||||||||||| |||||| ||||  |||||||| ||||| || ||||| |||||    
T  20057760 tttagctgtctgaatcgattcacacatttagttattcgattcattgtgttgtttttggccaaatttttgcacttgccactcttttctacatatactcata 20057661  T
Q  241 tcctcgtaacacc 253  Q
    ||||| |||||||    
T  20057660 tcctcataacacc 20057648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 25917563 - 25917471
Alignment:
Q  160 tcacacatttagtgaatcgattcattatgttgtttttgaccaaatatttgatcttgccacccttttgtatatatattcatatcctcgtaacac 252  Q
    ||||||||||||||||| |||||| ||||||||||||| || ||  |||| ||||||||||||||| ||||||||  || |||||| ||||||    
T  25917563 tcacacatttagtgaattgattcactatgttgtttttggccgaaattttgctcttgccacccttttctatatatacacacatcctcataacac 25917471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 234
Target Start/End: Original strand, 18957961 - 18958054
Alignment:
Q  141 tttagctgtctaaatcgaatcacacatttagtgaatcgattcattatgttgtttttgaccaaatatttgatcttgccacccttttgtatatata 234  Q
    |||| |||||| |||||| ||||||||| |||||||||||||| ||||||||||||| || ||  |||| | ||||||| ||||| ||||||||    
T  18957961 tttaactgtctgaatcgattcacacattaagtgaatcgattcactatgttgtttttggccgaaattttgcttttgccacacttttctatatata 18958054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 234
Target Start/End: Original strand, 16700528 - 16700621
Alignment:
Q  141 tttagctgtctaaatcgaatcacacatttagtgaatcgattcattatgttgtttttgaccaaatatttgatcttgccacccttttgtatatata 234  Q
    ||||||||||| |||||| |||||||||||||||||| ||||     ||||||||||  | ||||||||  |||||||||||||| ||||||||    
T  16700528 tttagctgtctgaatcgattcacacatttagtgaatcaattcgcatagttgtttttggacgaatatttgcacttgccacccttttctatatata 16700621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 239
Target Start/End: Complemental strand, 18339015 - 18338917
Alignment:
Q  141 tttagctgtctaaatcgaatcacacatttagtgaatcgattcattatgttgtttttgaccaaatatttgatcttgccacccttttgtatatatattcat 239  Q
    ||||| |||||||||||| |||  |||||| |||||||||||| ||||||||||||| || ||  ||||  ||| ||||| |||| |||||||| ||||    
T  18339015 tttagttgtctaaatcgactcaagcatttaatgaatcgattcactatgttgtttttggccgaaattttgcacttaccaccattttctatatatactcat 18338917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 24660314 - 24660366
Alignment:
Q  145 gctgtctaaatcgaatcacacatttagtgaatcgattcattatgttgtttttg 197  Q
    ||||||| |||||| |||||||||||||||||||||||| | ||||| |||||    
T  24660314 gctgtctgaatcgattcacacatttagtgaatcgattcactttgttgcttttg 24660366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 22846743 - 22846783
Alignment:
Q  141 tttagctgtctaaatcgaatcacacatttagtgaatcgatt 181  Q
    ||||||||||  |||||| ||||||||||||||||||||||    
T  22846743 tttagctgtccgaatcgattcacacatttagtgaatcgatt 22846783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 50 - 253
Target Start/End: Original strand, 13885230 - 13885434
Alignment:
Q  50 tttgactcgtatcagccttcatctaggggcatatgaatcgattcaaatatagtatgattcgcatcgatcttcatggctcaacttgcttgtc-tttagctg 148  Q
    ||||| ||||||||  |||||||| |||  || |||||||||||||| |  || |||| || ||  |||||||| |||||  | ||||||| ||||||||    
T  13885230 tttgaatcgtatcaatcttcatctggggatatttgaatcgattcaaaaagtgtctgatgcgtataaatcttcatagctcatatggcttgtcatttagctg 13885329  T
Q  149 tctaaatcgaatcacacatttagtgaatcgattcattatgttgtttttgaccaaatatttgatcttgccacccttttgtatatatattcatatcctcgta 248  Q
    |||||||||| ||||||||| |||||||||||||| ||||||||||||| || ||  ||||  | | |||||||||| ||||||||  ||  ||||||||    
T  13885330 tctaaatcgattcacacattaagtgaatcgattcactatgttgtttttggccgaaattttgcacctcccacccttttctatatatacacacttcctcgta 13885429  T
Q  249 acacc 253  Q
    |||||    
T  13885430 acacc 13885434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 253
Target Start/End: Complemental strand, 5555230 - 5555059
Alignment:
Q  83 tgaatcgattcaaatatagtatgattcgcatcgatcttcatggctcaacttgcttgtc-tttagctgtctaaatcgaatcacacatttagtgaatcgatt 181  Q
    ||||||||||||||||  || |||| || ||| ||||| || | ||| || ||||||| ||||||||||| |||||| ||||||||| |||||||| |||    
T  5555230 tgaatcgattcaaatagtgtctgatgcgtatcaatctttatagttcatctggcttgtcatttagctgtctgaatcgattcacacattaagtgaatccatt 5555131  T
Q  182 cattatgttgtttttgaccaaatatttgatcttgccacccttttgtatatatattcatatcctcgtaacacc 253  Q
    || | |||||||||||  | ||  ||||  |||||||||||||| ||||||||  ||  |||||||||||||    
T  5555130 cactctgttgtttttggtcgaaattttgcacttgccacccttttctatatatacacacttcctcgtaacacc 5555059  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 253
Target Start/End: Original strand, 19305676 - 19305788
Alignment:
Q  141 tttagctgtctaaatcgaatcacacatttagtgaatcgattcattatgttgtttttgaccaaatatttgatcttgccacccttttgtatatatattcata 240  Q
    ||||||||||| |||||| ||||||||| ||||||||||||||    ||||||||||| || | |||||  |||  ||||||||| |||||||| |||      
T  19305676 tttagctgtctgaatcgattcacacattaagtgaatcgattcacatagttgtttttgaacataaatttgcacttctcacccttttctatatatactcact 19305775  T
Q  241 tcctcgtaacacc 253  Q
    |||||||||||||    
T  19305776 tcctcgtaacacc 19305788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 23295502 - 23295576
Alignment:
Q  160 tcacacatttagtgaatcgattcattatgttgtttttgaccaaatatttgatcttgccacccttttgtatatata 234  Q
    ||||||||| |||||||||||||| || |||||||||| |  ||  |||| ||||||||||||||| ||||||||    
T  23295502 tcacacattaagtgaatcgattcaataagttgtttttggctgaaattttgctcttgccacccttttctatatata 23295576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 13904653 - 13904700
Alignment:
Q  136 ttgtctttagctgtctaaatcgaatcacacatttagtgaatcgattca 183  Q
    |||||||| |||||||||||| | |||| |||||||||||||||||||    
T  13904653 ttgtcttttgctgtctaaatcaattcactcatttagtgaatcgattca 13904700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 196
Target Start/End: Original strand, 16973660 - 16973771
Alignment:
Q  86 atcgattcaaatatagtatgattcgcatcgatcttcatggctcaacttgcttgtcttta-gctgtctaaatcgaatcacacatttagtgaatcgattcat 184  Q
    |||||||||||||||   ||| ||||||| ||| ||||   ||| || ||||||||||  ||||||| ||| || ||||||||||||||| | ||||||     
T  16973660 atcgattcaaatatacactgaatcgcatcaatcatcatatgtcatctagcttgtctttttgctgtctgaattgattcacacatttagtgagttgattcac 16973759  T
Q  185 tatgttgttttt 196  Q
    ||||||||||||    
T  16973760 tatgttgttttt 16973771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 183
Target Start/End: Original strand, 7653996 - 7654064
Alignment:
Q  116 atcttcatggctcaacttgcttgtcttt-agctgtctaaatcgaatcacacatttagtgaatcgattca 183  Q
    |||||||| | ||| || |||||||||| |||||| | |||||| ||| ||||||||||||||||||||    
T  7653996 atcttcatagttcatctggcttgtcttttagctgtttgaatcgattcatacatttagtgaatcgattca 7654064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 197
Target Start/End: Complemental strand, 24698378 - 24698346
Alignment:
Q  165 catttagtgaatcgattcattatgttgtttttg 197  Q
    ||||||||||||||||||| |||||||||||||    
T  24698378 catttagtgaatcgattcactatgttgtttttg 24698346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 133 - 253
Target Start/End: Complemental strand, 16648400 - 16648279
Alignment:
Q  133 tgcttgtcttt-agctgtctaaatcgaatcacacatttagtgaatcgattcattatgttgtttttgaccaaatatttgatcttgccacccttttgtatat 231  Q
    ||||||||||| |||||||| ||| || |||||||||||||||| |||||||  |||||||||||| |||||  ||||  || ||||||||||| |||||    
T  16648400 tgcttgtcttttagctgtctgaattgattcacacatttagtgaaacgattcaccatgttgtttttggccaaaattttgcactggccacccttttctatat 16648301  T
Q  232 atattcatatcctcgtaacacc 253  Q
    ||| |||  ||||| |||||||    
T  16648300 atagtcacttcctcataacacc 16648279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 245
Target Start/End: Original strand, 17815910 - 17816009
Alignment:
Q  146 ctgtctaaatcgaatcacacatttagtgaatcgattcattatgttgtttttgaccaaatatttgatcttgccacccttttgtatatatattcatatcctc 245  Q
    |||||| |||| | ||| ||||||| ||| | |||||||||||||||||||| | |||| |||   |||||||| | ||| |||||||| ||||||||||    
T  17815910 ctgtctgaatcaattcaaacatttattgatttgattcattatgttgtttttggctaaatttttacacttgccactcatttatatatatagtcatatcctc 17816009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 196
Target Start/End: Complemental strand, 24464326 - 24464212
Alignment:
Q  83 tgaatcgattcaaatatagtatgattcgcatcgatcttcatggctcaacttgcttgtc-tttagctgtctaaatcgaatcacacatttagtgaatcgatt 181  Q
    ||||||||||||||| | || |||| || ||| |||||||| | ||| |||||||||| ||| | ||||||| |||| || |||||| ||| |||||| |    
T  24464326 tgaatcgattcaaatttggtttgatacgtatcaatcttcatagttcatcttgcttgtctttttgttgtctaagtcgattctcacattaagtaaatcgact 24464227  T
Q  182 cattatgttgttttt 196  Q
    || |||||| |||||    
T  24464226 cactatgttattttt 24464212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 234
Target Start/End: Complemental strand, 24375360 - 24375279
Alignment:
Q  153 aatcgaatcacacatttagtgaatcgattcattatgttgtttttgaccaaatatttgatcttgccacccttttgtatatata 234  Q
    |||||| |||| |||| ||||| |||||||| ||||||||||||| || ||  ||||  ||| |||||||||| ||||||||    
T  24375360 aatcgattcacgcattaagtgactcgattcactatgttgtttttggccgaaattttgcactttccacccttttttatatata 24375279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 234
Target Start/End: Original strand, 10491876 - 10492061
Alignment:
Q  50 tttgactcgtatcagccttcatctaggggcatatgaatcgattcaaatatagtatgattcgcatcgatcttcatggctcaacttgcttgtc-tttagctg 148  Q
    ||||| ||||||||  ||||||||||||  || |||||| |||||||||  || ||||  | ||| |||||||| | ||| || || |||| ||||||||    
T  10491876 tttgaatcgtatcaatcttcatctagggatatttgaatcaattcaaataatgtctgatgtgtatcaatcttcattgttcatctggcctgtcatttagctg 10491975  T
Q  149 tctaaatcgaatcacacatttagtgaatcgattcattatgttgtttttgaccaaatatttgatcttgccacccttttgtatatata 234  Q
    ||| |||||| ||||||||| |||||| ||||||| | ||||||||||| || ||  |||  ||||||| ||||||| ||||||||    
T  10491976 tctgaatcgattcacacattaagtgaaccgattcactctgttgtttttggccgaaatttttttcttgccgcccttttctatatata 10492061  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 253
Target Start/End: Complemental strand, 24006037 - 24005906
Alignment:
Q  123 tggctcaacttgcttgtctttagctgtctaaatcgaatcacacatttagtgaatcgattcattatgttgtttttgaccaaatatttgatcttgccaccct 222  Q
    |||||||||||| |||| |||| |||||||||| || ||||||||||||||| |||||||||| |||  |||||| ||| || ||||   ||||||| ||    
T  24006037 tggctcaacttgtttgtttttaactgtctaaatggattcacacatttagtgattcgattcattgtgtattttttg-ccatatgtttgcatttgccactct 24005939  T
Q  223 tttgtatatatat--tcatatcctcgtaacacc 253  Q
    ||| |||||||||  | |||||||| |||||||    
T  24005938 tttttatatatatacttatatcctcataacacc 24005906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 20402807 - 20402851
Alignment:
Q  153 aatcgaatcacacatttagtgaatcgattcattatgttgtttttg 197  Q
    |||||||||| |||||||||||||||||||||   ||||||||||    
T  20402807 aatcgaatcatacatttagtgaatcgattcatgtagttgtttttg 20402851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 203
Target Start/End: Original strand, 17979929 - 17980002
Alignment:
Q  131 cttgcttgtc-tttagctgtctaaatcgaatcacacatttagtgaatcgattcattatgttgtttttgaccaaa 203  Q
    |||||||||| ||| ||||||| |||||||||||||||| | |||||||||||| ||||||||||||| |||||    
T  17979929 cttgcttgtccttttgctgtctgaatcgaatcacacattaaatgaatcgattcagtatgttgtttttggccaaa 17980002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 234
Target Start/End: Original strand, 24373360 - 24373449
Alignment:
Q  145 gctgtctaaatcgaatcacacatttagtgaatcgattcattatgttgtttttgaccaaatatttgatcttgccacccttttgtatatata 234  Q
    ||||||| ||| || ||||||||| |||||||||||||| | ||||||||||| |  ||  ||||  |||||||||||||| | ||||||    
T  24373360 gctgtctgaattgattcacacattaagtgaatcgattcactctgttgtttttggctgaaattttgcacttgccacccttttctgtatata 24373449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 253
Target Start/End: Complemental strand, 29842459 - 29842323
Alignment:
Q  117 tcttcatggctcaacttgcttgtctttagctgtctaaatcgaatcacacatttagtgaatcgattcattatgttgtttttgaccaaatatttgatcttgc 216  Q
    ||||||| | ||| || ||||| |||| | ||||| |||||| |||||||||| ||||||||||||  || ||| |||||| || ||| |||   |||||    
T  29842459 tcttcattgatcatctggcttggcttttgttgtctgaatcgattcacacatttggtgaatcgattcgctaagttatttttggccgaatttttacacttgc 29842360  T
Q  217 cacccttttgtatatatattcatatcctcgtaacacc 253  Q
    |||||| || |||||| | |||  ||||| |||||||    
T  29842359 caccctattctatataaactcacttcctcataacacc 29842323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 239
Target Start/End: Original strand, 54724 - 54844
Alignment:
Q  119 ttcatggctcaacttgcttgtctttagctgtctaaatcgaatcacacatttagtgaatcgattcattatgttgtttttgaccaaatatttgatcttgcca 218  Q
    ||||||||||   ||| |||||||||| ||||| |||||| | ||||||||||||||| | |||| ||||| ||||||| |||||| |||   |||||||    
T  54724 ttcatggctcgggttggttgtctttagttgtctgaatcgatttacacatttagtgaattggttcactatgtggtttttggccaaatttttccacttgcca 54823  T
Q  219 cccttttgtatatatattcat 239  Q
      ||||| |||||||| ||||    
T  54824 gtcttttctatatatactcat 54844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 253
Target Start/End: Complemental strand, 40026 - 39938
Alignment:
Q  165 catttagtgaatcgattcattatgttgtttttgacc-aaatatttgatcttgccacccttttgtatatatattcatatcctcgtaacacc 253  Q
    |||||||||||| |||||| ||||||||||||| || |||| ||| | |||||||||||||| |||| ||| |||  ||||| |||||||    
T  40026 catttagtgaattgattcactatgttgtttttggccgaaatttttca-cttgccacccttttctatagatagtcacttcctcataacacc 39938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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