View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9823_low_4 (Length: 238)
Name: NF9823_low_4
Description: NF9823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9823_low_4 |
 | |
|
| [»] scaffold0008 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 24592890 - 24593104
Alignment:
| Q |
1 |
atacgaagtagtgaatcgattcacaatgatatgattcaaggaatcatgaatcaaatcaaaatgaatgaaaaattggtagaaactttgagtgatacgattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24592890 |
atacgaagtagtgaatcgattcacaatgatataattcaaggaatcattaatcaaatcaaaatgaatgaaaaattggtagaaactttgagtgatacgattc |
24592989 |
T |
|
| Q |
101 |
aaaaaagtgtgaatcgattcaattggctagaaaatcgttttgaccaaaaacaatgaagttttcttcatataatcaacatactagacaacaagggatcata |
200 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24592990 |
aaaaaagtgagaatcaattcaattggctagaaaatcgttttgaccaaaaacaatgaagttttcttcatacaatcaacatactagacaacaagggatcata |
24593089 |
T |
|
| Q |
201 |
tgacacacgagacaa |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
24593090 |
tgacacacgagacaa |
24593104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 200
Target Start/End: Original strand, 18577820 - 18577930
Alignment:
| Q |
90 |
tgatacgattcaaaaaagtgtgaatcgattcaattggctagaaaatcgttttgaccaaaaacaatgaagttttcttcatataatcaacatactagacaac |
189 |
Q |
| |
|
||||||||||||||| ||| |||||| | |||||| ||||||| || ||||||||| || ||||||||||||| |||| ||| |||| || ||||||| |
|
|
| T |
18577820 |
tgatacgattcaaaatagtttgaatctaatcaattttctagaaagtcattttgaccatgaaaaatgaagttttctgcatacaatgaacacacaagacaac |
18577919 |
T |
|
| Q |
190 |
aagggatcata |
200 |
Q |
| |
|
|||||| |||| |
|
|
| T |
18577920 |
aagggaccata |
18577930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 17773663 - 17773623
Alignment:
| Q |
23 |
acaatgatatgattcaaggaatcatgaatcaaatcaaaatg |
63 |
Q |
| |
|
|||||||||||||| ||| ||||||||||| |||||||||| |
|
|
| T |
17773663 |
acaatgatatgattgaagaaatcatgaatcgaatcaaaatg |
17773623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 203
Target Start/End: Original strand, 10248742 - 10248911
Alignment:
| Q |
34 |
attcaaggaatcatgaatcaaatcaaaatgaatgaaaaattggtagaaactttgagtgatacgattcaaaaaagtgtgaatcgattcaattggctagaaa |
133 |
Q |
| |
|
|||||| |||||||||||| | ||||| ||| |||||| | ||||||||| ||||| ||||||||||||| ||||| || |||||||| |||||| |
|
|
| T |
10248742 |
attcaaagaatcatgaatcgtttaaaaatttatggaaaattagcagaaacttttcatgataagattcaaaaaagtttgaattgaatcaattggttagaaa |
10248841 |
T |
|
| Q |
134 |
atcgttttgaccaaaaacaatgaagttttcttcatataatcaacatactagacaacaagggatcatatga |
203 |
Q |
| |
|
| | |||||||||| || |||||||||||||| ||| || ||| | || ||||||||||||||||||||| |
|
|
| T |
10248842 |
aacattttgaccaagaaaaatgaagttttctttatacaaacaaaacacaagacaacaagggatcatatga |
10248911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 23008615 - 23008525
Alignment:
| Q |
16 |
tcgattcacaatgatatgattcaaggaatcatgaatcaaatcaaaatgaatgaaaaattggtagaaactttgagtgatacgattcaaaaaa |
106 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||| |||| ||||| |||||||||| | |||||||| ||||||||||||||||| |
|
|
| T |
23008615 |
tcgattcataatgatataattcaaggaatcatgaatcgaatcgaaatgtatgaaaaatttgctgaaacttttcatgatacgattcaaaaaa |
23008525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 207
Target Start/End: Complemental strand, 19018080 - 19017966
Alignment:
| Q |
93 |
tacgattcaaaaaagtgtgaatcgattcaattggctagaaaatcgttttgaccaaaaacaatgaagttttcttcatataatcaacatactagacaacaag |
192 |
Q |
| |
|
||||||||| || |||||||||||| ||||||||| |||||||| ||| ||||| || ||||||||||||| || || | ||| || ||||| |||| |
|
|
| T |
19018080 |
tacgattcagaatagtgtgaatcgaatcaattggccagaaaatcatttagaccatgaaaaatgaagttttctacaagcaaacgacacacaagacaccaag |
19017981 |
T |
|
| Q |
193 |
ggatcatatgacaca |
207 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
19017980 |
ggaacatatgacaca |
19017966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 200
Target Start/End: Complemental strand, 54497 - 54387
Alignment:
| Q |
90 |
tgatacgattcaaaaaagtgtgaatcgattcaattggctagaaaatcgttttgaccaaaaacaatgaagttttcttcatataatcaacatactagacaac |
189 |
Q |
| |
|
||||||||||||||| ||| ||||| || |||||| |||||||||| || ||||| || ||||||||||||| | || || |||||||| ||||| | |
|
|
| T |
54497 |
tgatacgattcaaaatagtctgaattgaatcaattaactagaaaatcacttagaccatgaaaaatgaagttttctacttacaaacaacatacaagacacc |
54398 |
T |
|
| Q |
190 |
aagggatcata |
200 |
Q |
| |
|
|||||| |||| |
|
|
| T |
54397 |
aagggaccata |
54387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 30073712 - 30073676
Alignment:
| Q |
24 |
caatgatatgattcaaggaatcatgaatcaaatcaaa |
60 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
30073712 |
caatgatatgattcaaagaatcatgaatcgaatcaaa |
30073676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University